Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01129 ATGTCTCTCAAGAGCATTATTCAGGACATGAAGGGGGAGATCGGTAGCATTTCGAAGAAGGGGTTTGAGGTGAAGCTTGGATATGGATTGAGATCGAGGTCACATCGGGTGGTTCAGGATGGGTTGGTACCGAATGTCGATGCTTTGAAGCAAAGCTGTTGGGCTAATATGCCGCCAGAGCTCCTGAGGGATGTGCTAATGAGGATAGAGGCGTCCGAGAGTTCGTGGCCTCTGCGGAAACATGTTGTTGCATGTGCTGGAGTTTGCAGGAGTTGGAGAGAAACCACAAAAGAGATCGTGAAAACCCCTGAAGTGTCGGGCAAGTTGACATTTCCGATCTCCTTGAAGCAGCCTGGTCCAAGGGACTCCATTATCCAATGTTTCATAAGGCGAAACCGGACTGCCCAAACATATCATCTTTACCTTGGTTTAACTCAAGCACTAACTGATAACGGCAAGTTTCTTCTCGCTGCACGCAAGAGTCGACGCCCCACCTACACAGACTACATCATCTCTGTAGATGCTGATGACATGTCAAAGGGGAGCGGAACCTACATTGGGAAGTTGAGATCAAACTTTTTGGGGACCAAGTTTACGATCTATGATGGCCAGCCTCCTCATGCTGGAGCTACAGTTACAAAATGTCGTTCCACTAGGCTAGTGGGTTTGAAACAGGTCTCTCCTAGAGTGCCTGCTGGCAACTACCCAGTCGCGCACATTTCATATGAGTTGAATGTTTTGGGTTCCAGGGGTCCAAGGAGAATGCAATGTGTCATGGATGCCATCCCTGCCTCTGCAATTGAAGAAGGAGGCGTAGCCCCAACACAGACAGAATTCTCACTTAGCAACCTGGATTCCTTCCCATCACTCCCATTTTTCCGTTCAAAATCGGCCCGCACGGAAAATGTCCCATCAGGATCTTTGGCATCCCAGAAAGAAGGAATGCTAGTTTTAAAAAACAAGGCTCCGAGGTGGCATGAGCAGCTCCAATGCTGGTGTCTGAACTTCCGAGGACGGGTAACAGTTGCTTCGGTGAAGAATTTTCAGCTGGTGGCTTCTGCAGAGAATGGGCAGGCTGGCCAGGAGCACGAGAAGGTCATCCTCCAGTTTGGAAAAGTGGGGAAGGACTTGTTCACCATGGATTTTCGGTATCCAATATCGGCGTTTCAGGCATTTGCTATCTGCCTCAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1221 0.4906 MSLKSIIQDMKGEIGSISKKGFEVKLGYGLRSRSHRVVQDGLVPNVDALKQSCWANMPPELLRDVLMRIEASESSWPLRKHVVACAGVCRSWRETTKEIVKTPEVSGKLTFPISLKQPGPRDSIIQCFIRRNRTAQTYHLYLGLTQALTDNGKFLLAARKSRRPTYTDYIISVDADDMSKGSGTYIGKLRSNFLGTKFTIYDGQPPHAGATVTKCRSTRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMQCVMDAIPASAIEEGGVAPTQTEFSLSNLDSFPSLPFFRSKSARTENVPSGSLASQKEGMLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVASAENGQAGQEHEKVILQFGKVGKDLFTMDFRYPISAFQAFAICLSSFDTKIACE* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01129 406 CDD F-box_AtTLP-like 54 98 - -
Eupl12g01129 406 Pfam Tub family 115 401 IPR000007 -
Eupl12g01129 406 Gene3D Tubby Protein; Chain A 113 406 IPR025659 -
Eupl12g01129 406 PRINTS Tubby superfamily signature 336 352 IPR000007 -
Eupl12g01129 406 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Eupl12g01129 406 PRINTS Tubby superfamily signature 384 406 IPR000007 -
Eupl12g01129 406 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Eupl12g01129 406 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Eupl12g01129 406 PRINTS Tubby superfamily signature 318 335 IPR000007 -
Eupl12g01129 406 PRINTS Tubby superfamily signature 363 382 IPR000007 -
Eupl12g01129 406 ProSitePatterns Tub family signature 1. 336 349 IPR018066 -
Eupl12g01129 406 ProSitePatterns Tub family signature 2. 391 406 IPR018066 -
Eupl12g01129 406 SUPERFAMILY Tubby C-terminal domain-like 103 406 IPR025659 -
Eupl12g01129 406 PANTHER TUBBY-RELATED 46 404 - -
Eupl12g01129 406 FunFam Tubby-like F-box protein 111 406 - -
Eupl12g01129 406 Pfam F-box domain 54 101 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01129 Eupl-Chr12 27632843 27638985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01129 1 406 TUB Transcription Factor Family AT2G47900 77.506 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Eupl12g01129 Tub 8.5e-114 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01129 K19600 - nnu:104588933 734.176