LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl12g01110	ATGGGGTGTGTATTCGGAAGAGAGGTTTCGTCTTCGGAGGTGAGGGAGAAGGAGAAGAAGAAGGAGAACGAGAATACTTTGCCTGTTTCTTCGGTTCGGAAAGCGCAGGTTACGGTTACGACAACAAAGATCGAGAGTAGTACTGAGGTCCAAAATGGGGAGATTCAGGAAGAGGAGAAGCAGGATGGGAGTCGACGTCCGCGTGGTGAGAGGAGAAGGTCCAGGCCGAATCCAAGACTGAGTAATCCCCCGAAGCATGTACATGGAGAGCAGGTCGCTGCTGGATGGCCGTCTTGGCTCTCTGCTGTTGCTGGTGAGGCAATCAAAGATTGGATTCCTCGGCGGGCTGACTCTTTTGAGAAGCTGGACAAGATAGGACAGGGAACTTACAGCAATGTGTACAAAGCTAGAGATACATTATCGGGGAAAATTGTGGCGTTAAAGAAGGTCCGGTTTGACAATTTGGAGCCTGAGAGTGTGAAATTTATGGCTAGAGAGATTCTCATCCTGCGGCGACTGGATCATCCCAATGTTGTAAAGCTGGAGGGTTTGGTCACTTCAAGGATGTCTTGTAGTTTGTATCTTGTCTTTGAGTACATGGAGCATGATTTGGCTGGACTCGCTGCGAGCCCGTCAATTAAGTTTACACAGCCTCAGGTAAAATGTTATATGCATCAATTATTGTCGGGACTTGAGCACTGTCACAACCGCGGTGTACTGCACCGTGACATTAAAGGGTCGAATCTCCTTCTTGATAATGGAGGAATACTTAAGATTGCTGATTTTGGATTGGCGTCTTTCTTCGATCCTAACCATAAGCAGCCCATGACTAGTCGGGTGGTTACTCTATGGTATCGAGCCCCAGAGCTTCTTTTGGGGGCTACTGATTATGGTGTGGGTGTGGACCTCTGGAGTGCAGGGTGCATTTTAGCCGAGTTATTGGCTGGGAAGCCTATCATGCCTGGGCGTACAGAGGTGGAGCAACTGCACAAGATTTTCAAGCTATGTGGCTCCCCTTCTGAGGAATATTGGAAGAAGTCAAAATTGCCACATGCAACCATATTTAAGCCCCAGCAGCCATACAAACGGTGCATAGCAGAGACATTTAAAGATTTCCCACCATCATCACTGCCATTAATTGAAACTCTTCTTGCAATTGACCCCGCTGAACGTCAAACTGCCACTGCTGCATTGAGGAGTGAATTCTTCACAACCAATCCTTATGCATGTGAGCCTTCAACCCTCCCACAATATCCTCCAAGCAAGGAGATGGATGCGAAACTACGGGATGAAGAAGCTAGAAGATTGCGCGCCGCTGGTGGCAAAGCAAATGGTGATGGTGTGAAGAAAACTCGCCCACGTGATCGAGCTGTAAGGGCAATTCCTGCACCAGAAGCCAATGCAGAGCTTCAAGCCAATCTTGATCGGCGGCGTCTAATTACACATGCAAATGCAAAGAGCAAGAGCGAGAAGTTTCCTCCCCCACACCAGGATGGTGCACTTGGCTTCCCCTTGGGTTCTTCACATCACATTGATCCTGCCTTTGATCCTCCTGATGTCCCATTCAGTTCAACATTCACATACCAAAAAGGGCAAGTGCAAACTTGGTCCGGTCCACTGGTGGATCCTGCTGCAGTTGGCGCTTCAAGACGGAAGAAAGGGACTGCTGGTGATGCACGTATACCATCAAAACCACCAACCAATGAATCGCAGAAAAATAAGGGTGGTGCTCGTGTCAAAAGGAAGGAAGGCATTGCATAA	1761	0.485	MGCVFGREVSSSEVREKEKKKENENTLPVSSVRKAQVTVTTTKIESSTEVQNGEIQEEEKQDGSRRPRGERRRSRPNPRLSNPPKHVHGEQVAAGWPSWLSAVAGEAIKDWIPRRADSFEKLDKIGQGTYSNVYKARDTLSGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPSIKFTQPQVKCYMHQLLSGLEHCHNRGVLHRDIKGSNLLLDNGGILKIADFGLASFFDPNHKQPMTSRVVTLWYRAPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRCIAETFKDFPPSSLPLIETLLAIDPAERQTATAALRSEFFTTNPYACEPSTLPQYPPSKEMDAKLRDEEARRLRAAGGKANGDGVKKTRPRDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGFPLGSSHHIDPAFDPPDVPFSSTFTYQKGQVQTWSGPLVDPAAVGASRRKKGTAGDARIPSKPPTNESQKNKGGARVKRKEGIA*	587

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl12g01110	586	MobiDBLite	consensus disorder prediction	28	51	-	-
	Eupl12g01110	586	MobiDBLite	consensus disorder prediction	10	27	-	-
	Eupl12g01110	586	MobiDBLite	consensus disorder prediction	53	77	-	-
	Eupl12g01110	586	FunFam	probable serine/threonine-protein kinase At1g54610	106	201	-	-
	Eupl12g01110	586	CDD	STKc_CDK9_like	119	403	-	-
	Eupl12g01110	586	FunFam	probable serine/threonine-protein kinase At1g54610	202	443	-	-
	Eupl12g01110	586	ProSitePatterns	Protein kinases ATP-binding region signature.	125	148	IPR017441	GO:0005524
	Eupl12g01110	586	Gene3D	Phosphorylase Kinase; domain 1	105	201	-	-
	Eupl12g01110	586	Gene3D	Transferase(Phosphotransferase) domain 1	202	441	-	-
	Eupl12g01110	586	Pfam	Protein kinase domain	119	403	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl12g01110	586	SUPERFAMILY	Protein kinase-like (PK-like)	113	408	IPR011009	-
	Eupl12g01110	586	SMART	serkin_6	119	403	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl12g01110	586	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	239	251	IPR008271	GO:0004672\|GO:0006468
	Eupl12g01110	586	MobiDBLite	consensus disorder prediction	485	586	-	-
	Eupl12g01110	586	MobiDBLite	consensus disorder prediction	522	536	-	-
	Eupl12g01110	586	MobiDBLite	consensus disorder prediction	1	90	-	-
	Eupl12g01110	586	ProSiteProfiles	Protein kinase domain profile.	119	403	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl12g01110	586	PANTHER	CELL DIVISION PROTEIN KINASE	117	407	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl12g01110	Eupl-Chr12	27449643	27463168	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl12g01110	111	435	Core Cell Cycle Gene Families	AT5G10270	51.613	1.11e-116	354

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Eupl12g01110		Pkinase	5.9e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl12g01110	K08819		-	ming:122057851	957.207