Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01108 ATGGAAGGCGTTGCTGATGAACGCCTGTATTTCGGGAAGATGGAATACGGATGCAAGCATTACAGAAGAAGATGCAAGATTCGAGCTCCCTGCTGCAACGAGATTTTCCCCTGCCGCCATTGTCACAACGAGGACACAAACATGCTGAGCAACCCCCTTGATCGTCACGAACTCGTTCGGCACGAGGTTAAGCAAGTCATTTGTTCAGTCTGCGACACTGAGCAGCAGGTTGCTCAATTCTGTTCAAACTGCGGTGTTAATATGGGAGAGTATTTCTGTGAAGTGTGCAAATTCTATGACGATGATACAGAGAAAGGACAGTTTCATTGTAATGACTGCGGGATTTGTAGACTTGGGGGTCGCGAGAACTACTTCCACTGCGAGAAGTGTGGATGTTGCTGTTCGGTGGGTTTGCGTGATAATCACGTATGTGTGGAGAACTTGATGCGGAATCCTTGTCCCATCTGTTTTGAGTATCTTTTCAACTCATTAAAAAAATCAAGAGTTCTGATGTGTGGTCACGCAATGCATGCACATTGTTTTCGCAAGATGATAAAGCTTGACCAATATTGTTGCCCCATATGCTCCAAATCAGTGATCGATATGTCTAAAGCCTGGAAGAGAATAGACGAGGAGATTGAAGCAACGCCTGTGGATTACCAGAACAAAAAGGTTTGGATCCTCTGTAACGACTGCAATGATACTTCCGAAGTGTTATTTCACATAATTGGGCAGAAATGCAGTCATTGCAAATCCTACAACACCCGCATGATTGCCCCGCCAGTTCTTCCTCAACGATTGGTTTCCTCTCTCTGA 816 0.4522 MEGVADERLYFGKMEYGCKHYRRRCKIRAPCCNEIFPCRHCHNEDTNMLSNPLDRHELVRHEVKQVICSVCDTEQQVAQFCSNCGVNMGEYFCEVCKFYDDDTEKGQFHCNDCGICRLGGRENYFHCEKCGCCCSVGLRDNHVCVENLMRNPCPICFEYLFNSLKKSRVLMCGHAMHAHCFRKMIKLDQYCCPICSKSVIDMSKAWKRIDEEIEATPVDYQNKKVWILCNDCNDTSEVLFHIIGQKCSHCKSYNTRMIAPPVLPQRLVSSL* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01108 271 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Eupl12g01108 271 FunFam RING finger and CHY zinc finger domain-containing protein 1 222 265 - -
Eupl12g01108 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 198 IPR013083 -
Eupl12g01108 271 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Eupl12g01108 271 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 262 - -
Eupl12g01108 271 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Eupl12g01108 271 Pfam Zinc finger, C3HC4 type (RING finger) 153 195 IPR018957 GO:0046872
Eupl12g01108 271 CDD RING-H2_Pirh2-like 152 196 - -
Eupl12g01108 271 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Eupl12g01108 271 Gene3D - 222 261 - -
Eupl12g01108 271 SUPERFAMILY RING/U-box 152 201 - -
Eupl12g01108 271 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Eupl12g01108 271 SMART ring_2 153 195 IPR001841 -
Eupl12g01108 271 Pfam Zinc-ribbon 200 256 IPR039512 -
Eupl12g01108 271 SUPERFAMILY CHY zinc finger-like 14 87 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01108 Eupl-Chr12 27416350 27433775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01108 13 264 C2H2 Transcription Factor Family AT3G18290 38.610 8.20e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01108 K10144 - vvi:100261415 490.73