Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01106 ATGGCGAAACCCTCGAATTCTGAGGCCTCATCCGAAGAAGCTCCATCGAACGACTCAATTTCTTCGGAGGAAGAACAGAAGAACGAAGAAATCAACGAGGAGGAGGATGAGGAAGAGCTCGAAGCCGTCGCGAGGACTACTGCTTCAGATGGTGATGAAGCAGGAGAGGAGAATTCACAATCAACTGAAGACGATGTAAAGAGCGACGAGGAGGAAGATGAGGAGGCTGGAGACGCTTTGGCTAATACTGAAATTGGAAAGCGTGAAAGGGCCAGGCTAAAGGAAATGCAAAGGTTGAAGAAACAGAAGATTCAGGAAATATTGGACGCACAGAATGCTGCCATTAATTCTGCCATGAACGTCAAAGGGAAGGGGCGTCTGAATTATCTCCTGCAGCAGACAGAGATATTTGCCCATTTTGCGAAAGGCAATCAAGCTGCATCTCAGAAAAAACCAAGGGGAAGAGGTCGTCATGCGTCCAAAGTAACCGAGGAAGAAGAAGATGAAGAATGCCTTAAGGAGGAAGAGGATGGTTATCCTGGTGCAGGAAGTACAAGATTGTTGACACAACCTTCTTGTATTCAAGGGAAGATGAGGGATTACCAACTAGCTGGATTAAATTGGCTGATACGGCTGTATGAGAATGGCATCAATGGGATTCTAGCAGATGAGATGGGGCTTGGGAAGACACTGCAAACCATCTCCCTACTGGGTTATTTGCGTGAGTGCAGAGGAATTACTGGCCCTCATATGGTGGTTGCACCTAAATCTACTCTTGGCAACTGGATGAAGGAGATTCGGCGCTTTTGCCCAATTTTGCGTGCTGTAAAATTTTTAGGAAACCCAGATGAAAGGAAGCATATACGTGAGGAAATGCTGGTGGCTGGGAAGTTTGACATCTGTGTGACTAGTTTTGAAATGGCCATCAAAGAAAAATCTTCTTTACGCCGCTTCAGCTGGCGCTATGTTATTATTGATGAGGCTCATCGAATCAAGAATGAGAATTCACTTCTTTCAAAAACAATGAGGCTCTTCAATACCAATTACCGCCTTCTTATTACGGGGACACCACTTCAGAACAATCTCCACGAGCTGTGGTCTCTTCTTAACTTTCTGCTTCCGGAGGTATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATATCAGGTGAAAACGACCAGCAAGAGGTTGTTCAACAGCTTCACAAGGTTCTCCGTCCATTTCTCCTTCGAAGGTTGAAGTCTGATGTTGAGAAAGGCTTGCCTCCAAAGAAGGAAACGATACTTAAAGTAGGGATGTCCCAATTGCAGAAGCAGTTTTACCGTGCTTTATTGCAGAAGGATCTAGAGGTTGTTAACGCTGGTGGAGAGCGTAAGCGTCTTCTGAATATAGCAATGCAGCTGCGTAAATGTTGTAATCATCCTTATCTTTTCCAAGGCGCTGAACCTGGCCCTCCGTATACTACAGGAGATCATCTTATTACCAATGCTGGTAAAATGGTTCTTTTAGATAAGCTGCTTGCAAAGCTGAAAGAGCGAGATTCCAGGGTCCTAATATTTTCGCAGATGACTAGACTGCTGGACATTCTGGAGGACTATTCAATGTTCCGTGGGTACTCGTACTGTCGAATCGATGGAAGTACTGGTGGAGAAGATCGTGATGCTGCAATTGAAGCATTCAACCAACCGGGAAGCGAAAAGTTCATCTTTTTGTTATCAACCAGAGCAGGTGGCCTTGGTATCAATCTTGCAACTGCTGATGTTGTCATTCTTTACGACAGTGATTGGAACCCACAAATGGATTTGCAAGCACAGGACCGTGCCCATAGAATTGGTCAAAAGAAAGAAGTTCAAGTGTTCCGTTTCTGCACAGAGTACACCATAGAGGAAAAAGTGATAGAGAGGGCTTATAAAAAGCTTGCACTCGATGCTTTAGTGATTCAACAAGGTCGATTAGCAGAGCAGAAAACTGTTAATAAAGACGAGTTGTTGCAAATGGTGAGATTTGGTGCTGAAATGGTTTTCAGTTCCAAGGACAACACCATCACAGACGAGGATATCGACAGAATCATAGCTAAAGGAGAAGAGGCAACAGCTGAGCTTGATGCCAAGATGAAGAAATTTACAGAAGATGCTATAAAATTTAAAATGGATGACACTGCTGAACTATATGACTTTGACGATGACAAGGATGATAATAAGTTTGACTTTAAGAAAATTGTCAGTGAGAACTGGACCGAGCCACCAAAAAGGGAGAGGAAGCGCAACTATTCAGAATCGGAATACTTCAAGCAAGCAATGCGCCAAGGTGGTCCAGCAAAACCAAGAGAACCACGAATTCCTCGCATGCCTCAGTTGCATGACTTCCAGTTCTTTAACACACAAAGACTAACTGAGCTATATGAAAAAGAAGTAAACTATCTCATGCAAACGCATCAAAGGAATCAGATGAGAGACACAATTGGAGATGGGGACGAACTTGAAGATTTAGGGGACCCCTTGACCGCGGAAGAACAGGAAGAAAAAGAGCAGCTATTAGAAGAGGGCTTTTCATCGTGGGCTAGGAGAGATTTTAATACTTTCATTCGGGCTTGTGAGAAATATGGGCGAAATGACATAAAAAGTATTGCTTCCGAAATGGAAGGCAAAACAGAAGACGAAGTTGAAAGATATGCCAAAGTTTTCAAAGAAAGATACAAGGAGTTAAATGATTATGATAGGATCATCAAGAACATTGAAAGAGGGGAGGCAAGAATCTCTCGGAAGGATGAGATCATGAAAGCAATCGGGAAGAAGTTGGACCGTTACAAGAATCCGTGGTTGGAACTGAAGATTCAGTATGGTCAGAATAAAGGGAAGCTATACAATGAAGAATGCGATCGTTTCATGTTATGCATGGTTCACAAGCTTGGGTATGGGAACTGGGACGAGCTCAAGGCAGCTTTCCGCACATCTCCCTTGTTTCGTTTTGATTGGTTTGTAAAGTCCCGCACCACTCAAGAACTCGCGAGGCGCTGTGATACCCTCATTCGGTTGGTGGAGAGAGAGAACCAAGAATTTGATGAGAGGGAGAGACAAGCTCGGAAAGATAAGAAGCTTGCCAAGAATTTGACCCCATCAAAGCGGGCTATGACGAGACTGCCAGCCGAGAGCCCCACTTTGGCTATGAAGAAGCGAAAGCAATCGACTATGGACGACTATCTAAGCTCGGGGAGGAGGAGGAAATGA 3231 0.4407 MAKPSNSEASSEEAPSNDSISSEEEQKNEEINEEEDEEELEAVARTTASDGDEAGEENSQSTEDDVKSDEEEDEEAGDALANTEIGKRERARLKEMQRLKKQKIQEILDAQNAAINSAMNVKGKGRLNYLLQQTEIFAHFAKGNQAASQKKPRGRGRHASKVTEEEEDEECLKEEEDGYPGAGSTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLRECRGITGPHMVVAPKSTLGNWMKEIRRFCPILRAVKFLGNPDERKHIREEMLVAGKFDICVTSFEMAIKEKSSLRRFSWRYVIIDEAHRIKNENSLLSKTMRLFNTNYRLLITGTPLQNNLHELWSLLNFLLPEVFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQLQKQFYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLAKLKERDSRVLIFSQMTRLLDILEDYSMFRGYSYCRIDGSTGGEDRDAAIEAFNQPGSEKFIFLLSTRAGGLGINLATADVVILYDSDWNPQMDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDNTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKDDNKFDFKKIVSENWTEPPKRERKRNYSESEYFKQAMRQGGPAKPREPRIPRMPQLHDFQFFNTQRLTELYEKEVNYLMQTHQRNQMRDTIGDGDELEDLGDPLTAEEQEEKEQLLEEGFSSWARRDFNTFIRACEKYGRNDIKSIASEMEGKTEDEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVERENQEFDERERQARKDKKLAKNLTPSKRAMTRLPAESPTLAMKKRKQSTMDDYLSSGRRRK* 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01106 1076 Coils Coil 93 113 - -
Eupl12g01106 1076 MobiDBLite consensus disorder prediction 1024 1076 - -
Eupl12g01106 1076 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 375 IPR014001 -
Eupl12g01106 1076 SMART ultradead3 194 386 IPR014001 -
Eupl12g01106 1076 Gene3D - 850 904 - -
Eupl12g01106 1076 Coils Coil 1011 1031 - -
Eupl12g01106 1076 Pfam SLIDE 907 1017 IPR015195 GO:0003677|GO:0005634|GO:0006338
Eupl12g01106 1076 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 165 1055 - -
Eupl12g01106 1076 Gene3D - 938 1040 - -
Eupl12g01106 1076 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 761 852 IPR036306 GO:0003677|GO:0006338|GO:0031491
Eupl12g01106 1076 CDD SANT 853 897 IPR001005 -
Eupl12g01106 1076 Gene3D ISWI, HAND domain 750 849 IPR036306 GO:0003677|GO:0006338|GO:0031491
Eupl12g01106 1076 MobiDBLite consensus disorder prediction 27 41 - -
Eupl12g01106 1076 FunFam ISWI chromatin-remodeling complex ATPase CHR11 419 711 - -
Eupl12g01106 1076 FunFam ISWI chromatin-remodeling complex ATPase CHR11 750 849 - -
Eupl12g01106 1076 Gene3D - 199 414 IPR038718 -
Eupl12g01106 1076 MobiDBLite consensus disorder prediction 143 184 - -
Eupl12g01106 1076 FunFam ISWI chromatin-remodeling complex ATPase CHR11 938 1041 - -
Eupl12g01106 1076 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 850 904 - -
Eupl12g01106 1076 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 696 IPR027417 -
Eupl12g01106 1076 ProSiteProfiles SANT domain profile. 849 901 IPR017884 -
Eupl12g01106 1076 MobiDBLite consensus disorder prediction 56 79 - -
Eupl12g01106 1076 SMART helicmild6 529 613 IPR001650 -
Eupl12g01106 1076 CDD SF2_C_SNF 499 624 - -
Eupl12g01106 1076 MobiDBLite consensus disorder prediction 1 17 - -
Eupl12g01106 1076 Gene3D - 419 711 IPR027417 -
Eupl12g01106 1076 FunFam Chromatin-remodeling complex ATPase 199 414 - -
Eupl12g01106 1076 Gene3D iswi atpase 905 937 - -
Eupl12g01106 1076 CDD DEXHc_SMARCA1_SMARCA5 195 415 IPR044754 GO:0005524
Eupl12g01106 1076 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 654 IPR001650 -
Eupl12g01106 1076 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 413 IPR027417 -
Eupl12g01106 1076 MobiDBLite consensus disorder prediction 1060 1076 - -
Eupl12g01106 1076 Coils Coil 17 41 - -
Eupl12g01106 1076 MobiDBLite consensus disorder prediction 1024 1038 - -
Eupl12g01106 1076 Pfam SNF2-related domain 211 478 IPR000330 GO:0005524|GO:0140658
Eupl12g01106 1076 SUPERFAMILY Homeodomain-like 905 1027 IPR009057 -
Eupl12g01106 1076 Pfam Helicase conserved C-terminal domain 501 613 IPR001650 -
Eupl12g01106 1076 SMART sant 952 1013 IPR001005 -
Eupl12g01106 1076 SMART sant 850 899 IPR001005 -
Eupl12g01106 1076 MobiDBLite consensus disorder prediction 1 89 - -
Eupl12g01106 1076 SUPERFAMILY Homeodomain-like 853 903 IPR009057 -
Eupl12g01106 1076 Pfam HAND 762 849 IPR015194 GO:0003677|GO:0006338|GO:0031491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01106 Eupl-Chr12 27400267 27411150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01106 219 640 RAD5 or RAD16-like Gene Family AT1G02670 27.647 9.05e-44 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl12g01106 SNF2_N 6.7e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01106 K11654 - nnu:104587602 1904.41