Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01092 ATGTACACTTCCAAAACCTTAGATAAACCCTCGAAAGCTGATGAATTCAGTTCAGTTCAAATGGGTTTTACTCTAACCACCCAATCTTACACATCTCCACCCATATCAAGTGAAAGAAGAGGCAGAAGAAAGCAAGCAGAACCAGGGAGGTTTCTTGGTGTCCGGCGACGACCTTGGGGCCGATATGCTGCTGAAATTAGAGACCCTACAACCAAGGAGAGGCATTGGCTTGGGACATTTGACACTGCCCAAGAAGCAGCTTTTGCTTATGACAGGGCTGCCCTCTCCATGAAGGGTACCCAAGCGAGAACCAACTTCATCTACTCTGAGAACACCCTCATTGCACCTTTTGATGCTCAAACCTTCCTACCACCACCACAATTCTTCATTAGTTCTCAGACCAAACAACCCATCAATCAGATCAACAGCTCATGTCAGCCCGATCCATATCGAGCACCCATCCAATTCGATCACGACGCATGTACTCAAGCTTCATATGTGTCTGCCACCAATAACAACTTCCTCTTCTCTACTGACTCCAGGTCAGGCTACTTAGAAAGCATAATTCCCGATAATTATTTGAAACCACCTTCAAATCCCACTAACTTAAGCTTCGAAAATTGCTCGACCAACCCGATCTTCGCTCCTTCATCACCTCTTGAAGCTCAACTTGATTATACTAACAATGGAGGTCCAGTGGATGCATTATGCGAGTTACCGAAGGCTTGGAACTTGGATAATTTTCATAACTTCGACGAGCTTAATCATGGTAATTGGACTAATGAACAGTCATGGGAACTGACTTCCTGGGAACTTGCTGCAGCAATGAACAACAATCCTTTAATGGTGGAAGATGGATGCATGGGAGCTTTGTATCCGTTTATCGACAATCCTGGTTGCATGTTCATGCCTCAGGCTGGTTCTTCAGACACTAATCTCCATCCATTCCTCCTTTAA 957 0.4493 MYTSKTLDKPSKADEFSSVQMGFTLTTQSYTSPPISSERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAAFAYDRAALSMKGTQARTNFIYSENTLIAPFDAQTFLPPPQFFISSQTKQPINQINSSCQPDPYRAPIQFDHDACTQASYVSATNNNFLFSTDSRSGYLESIIPDNYLKPPSNPTNLSFENCSTNPIFAPSSPLEAQLDYTNNGGPVDALCELPKAWNLDNFHNFDELNHGNWTNEQSWELTSWELAAAMNNNPLMVEDGCMGALYPFIDNPGCMFMPQAGSSDTNLHPFLL* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01092 318 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Eupl12g01092 318 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Eupl12g01092 318 FunFam Ethylene-responsive transcription factor 2 50 108 - -
Eupl12g01092 318 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 37 148 - -
Eupl12g01092 318 MobiDBLite consensus disorder prediction 24 50 - -
Eupl12g01092 318 SUPERFAMILY DNA-binding domain 51 108 IPR016177 GO:0003677
Eupl12g01092 318 Pfam AP2 domain 53 99 IPR001471 GO:0003700|GO:0006355
Eupl12g01092 318 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Eupl12g01092 318 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Eupl12g01092 318 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Eupl12g01092 318 CDD AP2 50 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01092 Eupl-Chr12 27266580 27267536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01092 1 201 AP2-EREBP Transcription Factor Family AT5G18560 44.882 4.79e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl12g01092 AP2 2.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01092 - - nnu:104587575 339.347