Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01090 ATGGAGTTCTACGGTAGGAATCCCGCGATGGAAGGGTCCGAATCGGATCCGCCGGGGGACTGGAACTCTCGGGCAGCCGATACCGGACTTCAAGAATCCATGTGGCAGTTGGGATTGGGCAGCACGGATTCCTACCCAGAGCGGCGCGACGAGCCCAATTGCATCTACTATATGCGTACTGGGTCCTGTGGCTACGGTTCCAGATGTCGGTTCAATCACCCTCGCGATCGCAGTACGGCTGTGGAAGCTGTAAGACAAGGAGGAGGGGAGTATCCAGAGCGGGAAGGCCAACCTGTATGCAAGTATTTTTTGAAGACTGGGACTTGCAAATTTGGGGCTTTGTGCAAGTACCACCATCCGAAATACGGAGGTGGATCGATGAGCCCCGCGTCACTAAATTATCACGGATACCCACTTCGACCGGGTGAGAAAGAGTGCTCCTACTACGTGAAAACGGGGCAGTGCAAGTTCGGTGAAACCTGTAAATTCCATCATCCACAACCAGCTGGTGCATCAGTACCGGCAGCTGCACCTGCATTTTATCAGACGGTGCAGTCTCCTTTGGTTCCTTCTAGTCAACAATACGGAGGAATGGTTGCCAGCTGGCAAGTTGCTAGGTCTCCGTTGTTACCTGGTTCATACATGCAAGGAACTTACGGTCCTCTTCTGCTTTCCCCAGGGATGGTTCCTGTTTCGGGTTGGAATCCTTATCCGGCACCTGTAAGCCCAGTGGCATCTCCTAGTGCTCAACCAACTGTTGGAGCCGGGCCAGTTTATGGGGTAACACAGCTCTCTCCTTTGGCATCTGCATATGCAGGACCTTATCTGCCCCCACCTTCTTCTGCTGGCCCTTCAAGCAGTAGCCAGAAGGAACACATGTTTCCAGAGAGACCTGGCCAACTTGAATGCCAGTATTACATGAGGACGGGGGATTGTAAATTTGGACCCACGTGTAAATACCATCATCCACCAGAATGGATAACCCCGAAAACAAATTGCATCCTCAGCTCAATGGGTCTCCCTCTGCGTCCGGGGGCTCCACTTTGCACTTTCTATTTACAACATGGACTATGCAAGTTTGGGCCAACGTGCAAATTCGATCATCCAACAGGGACACTGAGTTACAGTCCATCTGCATCTTCTCTTGCTGATATGCCAGTTGCTCCCTACCCTGTTGGCTCTTCGCTGGCTACCCTGGCCCCATCGTCCTCATCTTCAGACTTGCGGGCAGAATTTATTGCTGGGTCCAACAAGGATTCTTTCTCAACCAGAATGCCATCTTCTGAGAACACGTCCAGTGGTTCGGTCGGTTCAATTTTCTCGAGGAGTGGCCCTGTTCCTCATTTGAGTGTCCAACTGCCTGGTCAGAGTTCTGCCCCTTCAAATGGTACTAGTGGCACAGGTCATGGCGGCGAGGTTCGTAGTTCAAGCTGA 1434 0.5216 MEFYGRNPAMEGSESDPPGDWNSRAADTGLQESMWQLGLGSTDSYPERRDEPNCIYYMRTGSCGYGSRCRFNHPRDRSTAVEAVRQGGGEYPEREGQPVCKYFLKTGTCKFGALCKYHHPKYGGGSMSPASLNYHGYPLRPGEKECSYYVKTGQCKFGETCKFHHPQPAGASVPAAAPAFYQTVQSPLVPSSQQYGGMVASWQVARSPLLPGSYMQGTYGPLLLSPGMVPVSGWNPYPAPVSPVASPSAQPTVGAGPVYGVTQLSPLASAYAGPYLPPPSSAGPSSSSQKEHMFPERPGQLECQYYMRTGDCKFGPTCKYHHPPEWITPKTNCILSSMGLPLRPGAPLCTFYLQHGLCKFGPTCKFDHPTGTLSYSPSASSLADMPVAPYPVGSSLATLAPSSSSSDLRAEFIAGSNKDSFSTRMPSSENTSSGSVGSIFSRSGPVPHLSVQLPGQSSAPSNGTSGTGHGGEVRSSS* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01090 477 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Eupl12g01090 477 MobiDBLite consensus disorder prediction 1 27 - -
Eupl12g01090 477 SUPERFAMILY CCCH zinc finger 98 120 IPR036855 GO:0046872
Eupl12g01090 477 ProSiteProfiles Zinc finger C3H1-type profile. 94 122 IPR000571 GO:0046872
Eupl12g01090 477 ProSiteProfiles Zinc finger C3H1-type profile. 297 325 IPR000571 GO:0046872
Eupl12g01090 477 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Eupl12g01090 477 Gene3D - 296 381 - -
Eupl12g01090 477 Gene3D - 43 127 - -
Eupl12g01090 477 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Eupl12g01090 477 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Eupl12g01090 477 SMART c3hfinal6 343 370 IPR000571 GO:0046872
Eupl12g01090 477 SMART c3hfinal6 94 121 IPR000571 GO:0046872
Eupl12g01090 477 SMART c3hfinal6 297 324 IPR000571 GO:0046872
Eupl12g01090 477 PANTHER PROTEIN PHOSPHATASE RELATED 38 405 - -
Eupl12g01090 477 MobiDBLite consensus disorder prediction 418 440 - -
Eupl12g01090 477 MobiDBLite consensus disorder prediction 418 477 - -
Eupl12g01090 477 MobiDBLite consensus disorder prediction 450 477 - -
Eupl12g01090 477 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Eupl12g01090 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 75 IPR000571 GO:0046872
Eupl12g01090 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 167 IPR000571 GO:0046872
Eupl12g01090 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 121 IPR000571 GO:0046872
Eupl12g01090 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 324 IPR000571 GO:0046872
Eupl12g01090 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 345 369 IPR000571 GO:0046872
Eupl12g01090 477 SUPERFAMILY CCCH zinc finger 301 325 IPR036855 GO:0046872
Eupl12g01090 477 SUPERFAMILY CCCH zinc finger 346 373 IPR036855 GO:0046872
Eupl12g01090 477 ProSiteProfiles Zinc finger C3H1-type profile. 343 371 IPR000571 GO:0046872
Eupl12g01090 477 Gene3D - 128 173 - -
Eupl12g01090 477 SUPERFAMILY CCCH zinc finger 142 168 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01090 Eupl-Chr12 27249949 27258980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01090 1 447 C2H2 Transcription Factor Family AT5G18550 54.604 6.74e-153 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl12g01090 zf-CCCH 2.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01090 - - nnu:104587576 737.643