Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01078 ATGTCAAACATCACGGGTGATGGTGGGAGTTTCTCTTCTGGAAACACTGGAGGAGAAGAAGAAGAAGTCCAACAACTGCAACAACTACAAAATCAATTCCATTGCTCAAACTCAGGACCTTCTACTACAACTAACAGCAATGGCTCCACCTCTCAACAACAACCAGCACCTGCTAAGAAGAAGAGAAATCTTCCAGGAACTCCAGACCCGAGTGCGGAAGTCATTGCTCTATCGCCGACAACCCTAATGGCAACGAACCGATTCGTGTGCGAGATTTGCAACAAGGGGTTCCAAAGAGACCAAAACCTTCAATTGCACCGAAGAGGCCACAATCTTCCATGGAAGCTAAAGCAAAGAACAAGTACTGAGATAAGGAAGAGGGTGTATATATGCCCCGAGCCATCGTGCGTCCACCACAATCCGGCTCGAGCGCTAGGCGACCTCACGGGCATTAAGAAGCATTTTTGCCGAAAGCATGGCGAGAAGAAATGGAAATGTGACAAATGCTCGAAGAAGTATGCAGTGCAATCAGATTGGAAGGCTCATTCAAAAACCTGTGGTACAAGAGAGTACAAATGTGACTGTGGAACCATCTTCTCCAGAAGAGATAGCTTCATCACACACAGAGCTTTCTGTGATGCACTTGCAGAAGAAAACAACAAAGTAAACCAGGGATTAATGGGCACCATGGGAGGAAACTTACAAGGCCAGGTCTCTGAGCTCATGTCTTCAATGCCTACAAACAATACAACAAACACCTCGATTGGGATTTCCGAATTTAACCACACTGATGTGAAGAACCCACTGAAATCACTTCCCCATGATCTCATGCCGATGCCACTCAAGCCTATAAACATGGCAGGAGGCATGTTATCCAGCAGCTCCGGTACTCTCTTCGGTGGTCCAAGAAGCATCACTTCAGCCTCTTCATGTCTCCAACTTAGTGCGAACAGTTCGTCGAGCTTCGACGGCCTCCATGACAGTAAAAATGGAAGACAACTTGCCGGGTCGGCCCATATGTCGGCCACGGCCTTGTTGCAGAAAGCAGCTCAAATGGGTGCAACTGCAAGTAGCAATATCAACTCTCCAATGATGCAAAAGAGCTTTGTGTCGGGCATGGCAGGGCCTGATCAGCTTTCGGGTATGAGAACATCATCATATGGAGGAATGCAACACCATAACAGCCCATATGACTCACAAACAGACCAGTCATCACAACTAGTTGGGATGGATGGTGGAGGATTCACTAACCAGTTTTTACAGAAGGGTCCACAAGAGATGTCGTCGACGCAGTTTTTCGATACGACAGCCGGTGTCGATGGGTCACCGATGAACGATATGGGAATGTTCTCTGGACTATTCATGGGTGGTGATCATCAACACCATGGATTCTTAAAGAACATGGAGCATGAGAACAATAGTAGTAGTACTACTACTAGTATGTTGCCAGGAAGAACTGCGTTAGGGATGCCGGGAAGTGGACGGAATCCGACAGGACCGTCAAGGTTCGGAGGGAATGCTAGTGGAGATATGATGACTGTGGATTTCTTGGGTATCGGAGGATCGAGATCGGCGAGTTTACATGAACAACATCAGCATCAACAACACCAACAACACCAACAACAAGGATTGGAGTTTGAAGCTATTAGTCAGCAAAGAATGCAAGGGTTGCATCCCTTTCAACAACAGGTCTCACATGGGCAAGGAGCAATGGAGAAACCCATGTGGGATGTTTGA 1737 0.4715 MSNITGDGGSFSSGNTGGEEEEVQQLQQLQNQFHCSNSGPSTTTNSNGSTSQQQPAPAKKKRNLPGTPDPSAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEIRKRVYICPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNQGLMGTMGGNLQGQVSELMSSMPTNNTTNTSIGISEFNHTDVKNPLKSLPHDLMPMPLKPINMAGGMLSSSSGTLFGGPRSITSASSCLQLSANSSSSFDGLHDSKNGRQLAGSAHMSATALLQKAAQMGATASSNINSPMMQKSFVSGMAGPDQLSGMRTSSYGGMQHHNSPYDSQTDQSSQLVGMDGGGFTNQFLQKGPQEMSSTQFFDTTAGVDGSPMNDMGMFSGLFMGGDHQHHGFLKNMEHENNSSSTTTSMLPGRTALGMPGSGRNPTGPSRFGGNASGDMMTVDFLGIGGSRSASLHEQHQHQQHQQHQQQGLEFEAISQQRMQGLHPFQQQVSHGQGAMEKPMWDV* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01078 578 MobiDBLite consensus disorder prediction 524 543 - -
Eupl12g01078 578 Gene3D Classic Zinc Finger 143 222 - -
Eupl12g01078 578 SMART c2h2final6 164 184 IPR013087 -
Eupl12g01078 578 SMART c2h2final6 129 159 IPR013087 -
Eupl12g01078 578 SMART c2h2final6 88 110 IPR013087 -
Eupl12g01078 578 FunFam protein indeterminate-domain 12-like 67 135 - -
Eupl12g01078 578 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Eupl12g01078 578 MobiDBLite consensus disorder prediction 1 58 - -
Eupl12g01078 578 FunFam protein indeterminate-domain 5, chloroplastic-like 142 221 - -
Eupl12g01078 578 SUPERFAMILY beta-beta-alpha zinc fingers 87 184 IPR036236 -
Eupl12g01078 578 Pfam Zinc finger, C2H2 type 88 110 IPR013087 -
Eupl12g01078 578 Gene3D Classic Zinc Finger 66 133 - -
Eupl12g01078 578 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Eupl12g01078 578 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 41 541 IPR031140 -
Eupl12g01078 578 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01078 Eupl-Chr12 27052058 27056078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01078 49 357 IDZ Gene Family AT3G50700 55.090 6.76e-114 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl12g01078 zf-C2H2 0.006 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01078 - - nnu:104599011 819.69