Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01043 ATGGTCGAGACCAGGCGAGGCTCAGCTTCATCGAAGCGTTCTCTCCCCCCTGCAGGCTCGTCTCCTCGTTCGATCGGCAAACGCTCGAAGGTGACGGAGACATCGTCGTCTACGAACGAGGTTCCTTATGCTTCGCCGGTTGAAACCCTAGATTCGTCGAAGGAACTAGGTTCTGAATCTCGAGAACAGGAGGTTCGTGTCTTTGATCAGTCGGTTGTCAGTCCTTCAAAGGAATCCGATGTCTGCGATGCCATGCTTACAGAGGAATCTCCAGATGCTGATGAGGAAGGCGAAGTTTTGGCTTTGCCGTCGACTTTAGGCGGTTCTGTGGCGGAGGCGGAGAAATTGGTTGGTGAGGCATTGGATCGGGCACTGAAACGACCGGTGAAATCTCGTGCAAAGGTCGCATGGGGAAAGCTTTTTTCGCAGTGCTCTCAGAATCCTCACCTCCTCATTTGTGGGTCTCTTTTCACTGTTGGTCAAGGCCGACAGTGCAACCTATGGTTGAGAGATCCATCTGTCAGTACAATTCTGTGTAAACTGAGGCACATAGAGCGAGGAGGTTCATCTGTTGCTCTGCTAGAAATCTTAGGGGGCAAAGGTGTTGTCCAAGTAAATGGCAAGATATTCGAGAAAAATTCCACTGTAATCCTCAGTGGAGGGGATGAGGTGGTTTTTAGTTCATCTGGCAAACATGCTTATATTTTCGAGCAAATCGGGAATGAAAACTTGACTACTCCAGCCGTTCCTTCTTCAGTTAGTATTTCAGAAAGCCAGAGTGCTCCCATTAAAGGAGTACACTTTGAGACAAGGTCCGGAGACTCCTCGGCTGTTGCAGGAGCATCGATTTTAGCATCTCTATCAAACCTTAGAGAAGATTTGTCACTTCTTCCACCACCAGCCCAAAATGGTGCGAATGTACAGAATGGTTTAGAAAGGCCTACTCTACCTTCTGGTTGTGAAGTGTCAGACGGCCGTATTCCCGACCTTGATATCAATTGCGATATCAGAAAGGATAGTTCTGAAAATAACGAGGGGCTTGGTGTTTCTTCAAGTGAGAATGCTGCTGTTGTTCTATCTGCTGCTGACCTTGCTGCCAATGAAACCTTGCATCTTGATAACATTGACTTGGGTGCTCGTCTTGATATTGAAATTGGAAAGATTCCTGGGACAAATTGTGAATTAAGGCCACTTTTGCGGATGCTTGCTGGATCATCTGCTTCTGACTTTGATTTAAGTGGAAAAATTTTCAAAAGGCTTGATGAGCGAAGGGAAATTCGGGAACTCCTTAAAAATTTTGATCCACCAGCAATTTTGTCCTCAACTAGATGCCAAGCATTTAAGGATACTTTACAACAAGGAATTCTCAATTCTGGCGATATTGAAGTCTCCTTCGATAATTTTCCTTATTATCTAAGCGAGAGCACAAAGAATGTTTTAATTGCTTCCACATATATGCATTTGAAGCGTAACAATTTTGCAAAATTTGCCTCAGATCTCCCTACCGTAAGCCCGCGAATATTGTTATCTGGTCCTGCAGGTTCTGAAATATATCAGGAGACCTTGACAAAGGCACTGGCCAAACATTTTGTTGCTAGATTGCTTATAGTTGATTCTCTCCTGTTGCCTGGTGGGCTATCTTCAAAGGATTCAGAATCTAACAAAGAAGGTTCGAGAACAGAAAGATCGGGAATGTTTACAAAGCAAAGAGCTTCACAGGCAGATGGATTACAGCTTAAGAAACCAGCCCCTAGTGTTGAGGCTGATATTATTGGTGTATCTACGCTTAACTCCCAAGCTCTGCCAAAGCAGGAGTCATCAACTGCATCGTCCAAGAACTACACATTTAAAACAGGTGATAGAGTAAGATATGTGGGTTCGCTACATTCATCTGGATTTCCTCCTCTTCGGCCTCCTTCAAGGGGACCAACTTATGGTTATCGAGGCAAAGTAGTCCTTGCTTTGGAAGAAAATGGATCCTCTAAAGTTGGAGTTAGATTTGATAAAGCAATTCCAGAAGGTAACGATCTTGGGGGCCTCTGTGAAGAAGACCATGGTTTCTTTTGCACAGCTGATTTACTTCGTCTAGATAGTTCTGGAGGTGATGATATTGACAAACTTGCCATTAATGAATTGTTTGAGGTTGCTTCCAGCGAAAGTAAAAATGGTCCATTAATATTGTTTATGAAAGACATAGAGAAGTCAATGGTCGGCAATCCAGAGGCATATACAAATTTCAAGAGTAAGCTTGAAAATATGCCAGTGAACATAGTTGTGATTGGCTCGCATACCCAGATGGACAACCGTAAGGAGAAGTCGCATCCTGGTGGTCTTCTGTTTACAAAGTTCGGAAGCAACCAAACAGCTCTACTCGACTTAGCTTTTCCGGACAACCTTGGTAGGCTACATGAGAGAAACAAAGAGATTCCAAAGACAATGAAACAACTCACTCGACTTTTTCCGAATAAAGTGACTATACAGCTACCACAGGATGAAGCTCTACTTTTAGATTGGAAACAACAGTTGGACCGTGATGTTGAAACTCTCAAGGCTAAGTCAAACATTGTTAGCATTCGCTCAGTTCTAAACCGAATTGGATTGGAGTCCACTGACCTTGAAACACTATGCATAAAAGATCAAGCACTTAGTAGTGAAAGTGTGGAGAAGATAGTTGGTTGGGCTTTAAGTCATCACCTTATGCATAGTACTGATGCTTCTGTCATGGATGCTAAACCTGTGGTTTCCAGTGAGAGCATTAGGTATGGGCTCAACATTCTACATGGTATCCAAAATGAGTCTAAGAGTTTAAAGAAATCACTGAAGGATGTGGTAACTGAGAACGAATTTGAGAAGAGACTTCTGGCTGATGTTATTCCACCTAATGATATTGGAGTTAGTTTTGATGACATTGGAGCCTTAGAAAATGTTAAGGACACGTTGAAGGAATTGGTGATGCTTCCTTTGCAAAGACCTGAATTGTTTTGCAAAGGGCAGCTGACAAAGCCTTGCAAGGGAATACTGCTCTTTGGCCCTCCTGGTACAGGTAAAACAATGCTCGCAAAGGCTGTTGCAACAGAGGCAGGTGCAAACTTTATCAACATATCAATGTCAAGCATTACATCGAAGTGGTTTGGGGAAGGAGAAAAGTATGTCAAAGCAGTGTTCTCACTTGCAAGTAAAATTGCTCCTAGTGTTGTCTTTGTTGACGAGGTTGACAGCATGTTGGGAAGACGTGAAAATCCAGGAGAACATGAAGCTATGCGTAAAATGAAAAATGAGTTCATGGTAAACTGGGATGGTCTCCGCACAAAGGACAAAGAGCGTGTATTGGTACTTGCTGCCACCAATAGGCCTTTTGACCTTGATGAAGCTGTTATAAGGAGGCTTCCCCGAAGATTGATGGTAAATTTGCCAGACGCCGCAAACAGAGAAAAGATTATGAGAGTTATATTGGCCAAAGAAGATATGGCACCTGATGTTGATTTGGAAGCAGTTGCAAATATGACTGATGGATATTCTGGAAGTGACTTAAAGAATCTTTGTGTTTCTGCAGCACACTGCCCCATTAGAGAAATTCTGGACAAGGAAAAGAAGGAGAAATGTTCAGCGTTAACGGAGAACAGATCATTGCCTGCATTGCATAGCAGTGCAGATATTCGTCCTCTAAACATGGAGGATTTGAAATATGCACACGAGCAGGTATGTGCAAGTGTGGCGTCGGAGTCTTCAAATATGAACGAGCTCCTCCAATGGAATGAGCTATATGGAGAAGGTGGATCAAGGAAGAAGAGATCACTCAGCTACTTCATGTAG 3813 0.4338 MVETRRGSASSKRSLPPAGSSPRSIGKRSKVTETSSSTNEVPYASPVETLDSSKELGSESREQEVRVFDQSVVSPSKESDVCDAMLTEESPDADEEGEVLALPSTLGGSVAEAEKLVGEALDRALKRPVKSRAKVAWGKLFSQCSQNPHLLICGSLFTVGQGRQCNLWLRDPSVSTILCKLRHIERGGSSVALLEILGGKGVVQVNGKIFEKNSTVILSGGDEVVFSSSGKHAYIFEQIGNENLTTPAVPSSVSISESQSAPIKGVHFETRSGDSSAVAGASILASLSNLREDLSLLPPPAQNGANVQNGLERPTLPSGCEVSDGRIPDLDINCDIRKDSSENNEGLGVSSSENAAVVLSAADLAANETLHLDNIDLGARLDIEIGKIPGTNCELRPLLRMLAGSSASDFDLSGKIFKRLDERREIRELLKNFDPPAILSSTRCQAFKDTLQQGILNSGDIEVSFDNFPYYLSESTKNVLIASTYMHLKRNNFAKFASDLPTVSPRILLSGPAGSEIYQETLTKALAKHFVARLLIVDSLLLPGGLSSKDSESNKEGSRTERSGMFTKQRASQADGLQLKKPAPSVEADIIGVSTLNSQALPKQESSTASSKNYTFKTGDRVRYVGSLHSSGFPPLRPPSRGPTYGYRGKVVLALEENGSSKVGVRFDKAIPEGNDLGGLCEEDHGFFCTADLLRLDSSGGDDIDKLAINELFEVASSESKNGPLILFMKDIEKSMVGNPEAYTNFKSKLENMPVNIVVIGSHTQMDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDNLGRLHERNKEIPKTMKQLTRLFPNKVTIQLPQDEALLLDWKQQLDRDVETLKAKSNIVSIRSVLNRIGLESTDLETLCIKDQALSSESVEKIVGWALSHHLMHSTDASVMDAKPVVSSESIRYGLNILHGIQNESKSLKKSLKDVVTENEFEKRLLADVIPPNDIGVSFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAANREKIMRVILAKEDMAPDVDLEAVANMTDGYSGSDLKNLCVSAAHCPIREILDKEKKEKCSALTENRSLPALHSSADIRPLNMEDLKYAHEQVCASVASESSNMNELLQWNELYGEGGSRKKRSLSYFM* 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01043 1270 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 445 1269 - -
Eupl12g01043 1270 MobiDBLite consensus disorder prediction 25 46 - -
Eupl12g01043 1270 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 964 1140 - -
Eupl12g01043 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 965 1237 IPR027417 -
Eupl12g01043 1270 Gene3D - 1138 1232 - -
Eupl12g01043 1270 SUPERFAMILY SMAD/FHA domain 139 229 IPR008984 GO:0005515
Eupl12g01043 1270 MobiDBLite consensus disorder prediction 299 324 - -
Eupl12g01043 1270 ProSiteProfiles S4 RNA-binding domain profile. 200 239 - -
Eupl12g01043 1270 SMART AAA_5 1002 1139 IPR003593 GO:0016887
Eupl12g01043 1270 MobiDBLite consensus disorder prediction 1 68 - -
Eupl12g01043 1270 Pfam ATPase family associated with various cellular activities (AAA) 1006 1135 IPR003959 GO:0005524|GO:0016887
Eupl12g01043 1270 Gene3D - 136 245 - -
Eupl12g01043 1270 Gene3D - 593 699 IPR047008 -
Eupl12g01043 1270 MobiDBLite consensus disorder prediction 1 18 - -
Eupl12g01043 1270 Gene3D - 964 1243 IPR027417 -
Eupl12g01043 1270 MobiDBLite consensus disorder prediction 547 579 - -
Eupl12g01043 1270 Pfam AAA+ lid domain 1159 1195 IPR041569 -
Eupl12g01043 1270 ProSitePatterns AAA-protein family signature. 1109 1128 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01043 Eupl-Chr12 26657016 26677198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01043 965 1197 Calmodulin-binding Proteins AT3G56690 39.662 1.45e-40 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01043 - - nnu:104598971 1878.22