Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01037 ATGGGTGAAGAAGAAATCAAGGGAGGGGCTATTGTTCCTGAGTCTGTCTTGAAGAAGAGGAAGAGAAGTGAGGAATGGGCTTTGGCAAAAAATCAAGCCTTGGAAGTTCAGAAGAAGAAGAACTCTGAGAACAGAAAGCTCATCTTTAAGAGGGCTGAACAATATGCAAAAGAATACACAGAACAGGAGAAAGAGCTGATCAGTTTGAAGCGACAGGCCAAGCTAAAAGGAGGTTTCTATGTAAATCCAGAGGCCAAATTGCTGTTTATTATCCGTATCCGTGGTATCAATGCAATTGACCCAAAGACTAGAAAGATTTTGCAACTTCTTCGTCTGAGACAGATATTCAATGGCGTCTTTCTCAAAGTGAACAAAGCAACCGTGAACATGTTGCGTAGGGTTGAGCCTTATGTGACATATGGATATCCTAATCTTAAAAGCGTTAGGGAACTGATTTACAAGAGGGGTTATGGAAAGCTGAACAAGCAGAGGACCGCTTTGACTGATAACTCGATTGTTGAACAGGCCCTGGGCAAGTATGGGGTAATCTGCATGGAAGATCTGATTCATGAGATCATGACTGTTGGACCCCATTTCAAGGAAGCGAACAATTTCTTGTGGCCGTTCAAGTTGAGTGCTCCATCAGGGGGTTTGCAGAAAAAGAGGAACCATTACGTCGAAGGTGGAGATGCTGGAAATCGCGAGGATTACATCAACGAGCTCATCAGGAGGATGAATTAG 741 0.4345 MGEEEIKGGAIVPESVLKKRKRSEEWALAKNQALEVQKKKNSENRKLIFKRAEQYAKEYTEQEKELISLKRQAKLKGGFYVNPEAKLLFIIRIRGINAIDPKTRKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRTALTDNSIVEQALGKYGVICMEDLIHEIMTVGPHFKEANNFLWPFKLSAPSGGLQKKRNHYVEGGDAGNREDYINELIRRMN* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01037 246 ProSitePatterns Ribosomal protein L30 signature. 106 138 IPR018038 -
Eupl12g01037 246 SUPERFAMILY Ribosomal protein L30p/L7e 87 246 IPR036919 -
Eupl12g01037 246 Pfam Ribosomal protein L30p/L7e 88 138 IPR016082 -
Eupl12g01037 246 FunFam 60S ribosomal protein L7 87 191 - -
Eupl12g01037 246 NCBIfam 60S ribosomal protein uL30 13 246 IPR005998 GO:0000463|GO:0003735|GO:0022625
Eupl12g01037 246 Gene3D - 87 190 IPR036919 -
Eupl12g01037 246 Gene3D - 191 246 IPR036919 -
Eupl12g01037 246 CDD Ribosomal_L7_archeal_euk 87 246 IPR035808 -
Eupl12g01037 246 Pfam Ribosomal L30 N-terminal domain 12 82 IPR012988 -
Eupl12g01037 246 FunFam 60S ribosomal protein L7 192 246 - -
Eupl12g01037 246 Coils Coil 52 72 - -
Eupl12g01037 246 PANTHER 60S RIBOSOMAL PROTEIN L7 11 246 IPR039699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01037 Eupl-Chr12 26599380 26601432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01037 5 246 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 83.058 4.94e-153 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01037 K02937 - nnu:104606157 451.055