Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01026 ATGAAGTTCTGCAAAAAATATCAGGAATACATGCAAGGGCAAGAGAAAGTGCTACCTGGGGTTGGATTCAAGAAGCTCAAGAAGATTTTGAAGAAGTGTAGGAGAGATTTTCAATCCCAGGATGAGGAGAGAGAAGGGGTTCTTAACATCTCCAATTGCCCCCACCATTGCCCAGTGTGCGACGGGACCTTCTTCCCTTCCCTTCTCAAGGAGATGTCTGCAATTGTGGGTTGCTTTAATCAGCGTGCACAGAAGTTGCTCGAACTACACTTAGCTTCGGGTTTCCGAAAGTACTTTATATGGTTTAAAAGCAAGATACAAGGAAACCATTTGGCTTTGATTCAAGAAGGAAAAGACCTTGTTACCTATGCAATGATCAACAGCATTGCCATCCGGAAAATTTTAAAGAAATATGACAAGATCCATTACTCTAAGCAAGGGCAGGCCTTCAGATCACAAGCACAAAGTATGCATATTGAGATCCTTCAATCACCATGGCTCTGTGAGCTGATGGCCTTCCACATTAACTTGAGGAAAACCAAGGCCATGACAAGGACGGTCCCAGGGTTGTTTGAGGGCTGCTCACTCACATTTGAGGATGGCAAGCCATCACTCTCTTGTTCCCTCTTTGATTCCGTAAAGGTCGATGTTGACTTGACTTGTTCTATATGCTTGGACACAGTATTCGATTCGGTCTCTCTCACGTGTGGTCATATCTTCTGCTACATGTGTGCTTGCTCTGCTGCATCAGTGAGCATTGTGGATGGATTGAAGGCAGCAGAGCCTAAAGAAAAATGCCCTCTATGTCGAGAGGCAGGAGTATATGAAGGTGCTGTGCACCTGGAGGAGCTTAACATTCTAATAAGTCGAAGTTGCCATGAGTATTGGGAGCAGCGGCTTCAAACGGAAAGAGTAGAGCGGATTCGGCAGGCAAAGGAGCATTGGGAGTCCCAGTATCGAGCGTTCATGGGCATCTGA 978 0.4571 MKFCKKYQEYMQGQEKVLPGVGFKKLKKILKKCRRDFQSQDEEREGVLNISNCPHHCPVCDGTFFPSLLKEMSAIVGCFNQRAQKLLELHLASGFRKYFIWFKSKIQGNHLALIQEGKDLVTYAMINSIAIRKILKKYDKIHYSKQGQAFRSQAQSMHIEILQSPWLCELMAFHINLRKTKAMTRTVPGLFEGCSLTFEDGKPSLSCSLFDSVKVDVDLTCSICLDTVFDSVSLTCGHIFCYMCACSAASVSIVDGLKAAEPKEKCPLCREAGVYEGAVHLEELNILISRSCHEYWEQRLQTERVERIRQAKEHWESQYRAFMGI* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01026 325 CDD SPX_BAH1-like 2 148 - -
Eupl12g01026 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 322 IPR013083 -
Eupl12g01026 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 325 IPR033326 -
Eupl12g01026 325 ProSiteProfiles Zinc finger RING-type profile. 221 270 IPR001841 -
Eupl12g01026 325 CDD RING-HC_BAH1-like 211 284 - -
Eupl12g01026 325 SMART ring_2 221 269 IPR001841 -
Eupl12g01026 325 ProSitePatterns Zinc finger RING-type signature. 236 245 IPR017907 -
Eupl12g01026 325 Pfam Zinc finger, C3HC4 type (RING finger) 218 271 - -
Eupl12g01026 325 SUPERFAMILY RING/U-box 214 272 - -
Eupl12g01026 325 ProSiteProfiles SPX domain profile. 1 152 IPR004331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01026 Eupl-Chr12 26459391 26463393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01026 211 270 C3H Transcription Factor Family AT4G28270 38.806 3.49e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01026 K16275 - tcc:18613549 585.874