Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01020 ATGGATGGTAACAAGGACGAAGCATCGAGATGCATTGGGATAGCTGACGCAGCTCTTGCATCTGGCAATAAGCAGCGGGCGCTGAAATTCATTAGAATCGCACAACGCCTTAACCATAATCTCCCTGTTGATGATCTACTGGCCGCTTGTGAAAAGCTAGAGTCTACCTCCTCCACATCTTCTGCTGAAGGAAAACCCGTAGATCAAAACCCCAAAGTGCCTGCACCCTCTAACACTGCTGAGTTCACGAATGGCGACCGGACTTATACTGAAGAGCGTGTTAAGCTGATCCGTGAAGTCAAGAGAAACAAGGATTACTATGCAATTCTTGGTGTGGAAAAGACCTGTTCGGTCGAGGAGATTAGGAAGGCTTACAGGAAATTGTCTCTTAAGGTTCACCCTGACAAGAACAAGGCCCCGGGTTCAGAAGAGGCATTCAAGAAAGTCTGCAAGGCGTTCAAGTGCTTGAGCGATGAAGAATCAAGGAGACAGTATGATCAGACAGGTCTGGTCGAAGAATTTGAGTACAACCAGCAGCACAATATCAGGAGGAGGAGGAGGAGAACCACATATGACTCATTTAATGATGATTTCGACCCTGATGAGATATTCAGGTCATTCTTTGGTCAGGCCGACATGTTTCGGACTGCTCATTTGTACAGGACTAGAGGAATGGCCAATCAACAAAGGGCAAATTTTCATGGAGGAGGGTTTAATGTTATGGTTCTTCTTCATATCTTGCCATTCTTGATTATTATCTTGCTTGCTTATCTGCCTCTCTCCGATCCTGATTATTCCTTGCAGAAGACTTATTCCTATCAGTTTCACAAGGTCACGGAAAAAGAAGGGATAGAATTTTATGTTAAATCATCTGATTTTGATCAACATTTTCCACTCGGAAGTCATTCTAGAACAAACCTTGAGGACCATGTGGTGAGGGAACACAAAAGTGTACTTCGACGCTATTGTCATGTAGAGCTTCAAAGGCGTCAGTGGAACAGAAATTATCCTACGCCTCACTGCAACAAACTTCACAATCTCAAAGTAGCATGA 1053 0.4416 MDGNKDEASRCIGIADAALASGNKQRALKFIRIAQRLNHNLPVDDLLAACEKLESTSSTSSAEGKPVDQNPKVPAPSNTAEFTNGDRTYTEERVKLIREVKRNKDYYAILGVEKTCSVEEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVCKAFKCLSDEESRRQYDQTGLVEEFEYNQQHNIRRRRRRTTYDSFNDDFDPDEIFRSFFGQADMFRTAHLYRTRGMANQQRANFHGGGFNVMVLLHILPFLIIILLAYLPLSDPDYSLQKTYSYQFHKVTEKEGIEFYVKSSDFDQHFPLGSHSRTNLEDHVVREHKSVLRRYCHVELQRRQWNRNYPTPHCNKLHNLKVA* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01020 350 CDD DnaJ 105 158 IPR001623 -
Eupl12g01020 350 PRINTS DnaJ domain signature 107 125 IPR001623 -
Eupl12g01020 350 PRINTS DnaJ domain signature 125 140 IPR001623 -
Eupl12g01020 350 PRINTS DnaJ domain signature 141 161 IPR001623 -
Eupl12g01020 350 Gene3D DnaJ domain 101 219 IPR036869 -
Eupl12g01020 350 Pfam DnaJ domain 105 166 IPR001623 -
Eupl12g01020 350 SUPERFAMILY Chaperone J-domain 102 214 IPR036869 -
Eupl12g01020 350 FunFam Chaperone protein dnaJ 49 101 219 - -
Eupl12g01020 350 Pfam Domain of unknown function (DUF1977) 261 331 IPR015399 -
Eupl12g01020 350 SMART dnaj_3 104 161 IPR001623 -
Eupl12g01020 350 MobiDBLite consensus disorder prediction 57 86 - -
Eupl12g01020 350 ProSiteProfiles dnaJ domain profile. 105 169 IPR001623 -
Eupl12g01020 350 PANTHER AT29763P-RELATED 1 346 - -
Eupl12g01020 350 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01020 Eupl-Chr12 26374274 26379999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01020 4 166 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 27.381 3.71e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01020 K09518 - nnu:104598952 543.117