Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00988 ATGGGCGACAACGCAAGCGGTATTCCTCCGAACTACGCCCCGAAAAGCTACGCCTTGAGCGGGAAAATCATGTTGAGCGCCATGGTTATCTTGTTCACCGTCGTACTCCTCATCGTCTGCCTCCATATCTACGCCCATTGGTTCCTCGTCCGGGCCCGTCGACGCCACCATCTCCACCGCAGAAGTCGTCGGGCCCACCTCGTTTTCAATTCCGCTGTAACTACCAACAACGTCCTTGTCCCTTCTCGTGGCCTCGTCGCCTCCGTCCTCAAATCTCTCCCCATCTTCATCTACTCCTCCACCACCCACGACGACGTGCTAGAATGCGCTGTGTGCTTATCCGAGTTCGAGGAGAACGAGAAGGGACGTCTACTCCCGAAATGCAACCACAGCTTCCACATCGACTGCATCGACATGTGGTTCCACTCTCACTCAACATGCCCACTTTGCAGAGTCCCCGTTAAACCCGAAATTCCGGCACCATCGACCGAAACTCCATCTTTCGTAATCTCTGTTGAATCGGCCGAGTCAGAAACCGGGTCGAGTTCTGGGCTCTGCCCATTTTGTAGGCACGGCGAAGATGAAATGGGTTCTTCTTCTTCTTCTTCGAGTTTCTCATCTTTGGGGCCTCGAAGGAACGAGAGCTTCAGGGGTTTGGACGAGGAGCTTCAAGGGTCGCCGGGAAGCTACGCTCTGCAACTGAGGCTGATCTGGAGCGTGGAGAAGAACAAGAACTACAAGTTCAAGCTTCAAGGTGTGAGAGAATCAGAATCATCCGAGAACAACGTGACTCTCGCTCTCTCTCTATAG 810 0.537 MGDNASGIPPNYAPKSYALSGKIMLSAMVILFTVVLLIVCLHIYAHWFLVRARRRHHLHRRSRRAHLVFNSAVTTNNVLVPSRGLVASVLKSLPIFIYSSTTHDDVLECAVCLSEFEENEKGRLLPKCNHSFHIDCIDMWFHSHSTCPLCRVPVKPEIPAPSTETPSFVISVESAESETGSSSGLCPFCRHGEDEMGSSSSSSSFSSLGPRRNESFRGLDEELQGSPGSYALQLRLIWSVEKNKNYKFKLQGVRESESSENNVTLALSL* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00988 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 157 IPR013083 -
Eupl12g00988 269 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 155 IPR044675 -
Eupl12g00988 269 Pfam Ring finger domain 108 151 IPR001841 -
Eupl12g00988 269 CDD RING-H2_EL5-like 108 151 - -
Eupl12g00988 269 SUPERFAMILY RING/U-box 89 160 - -
Eupl12g00988 269 SMART ring_2 109 150 IPR001841 -
Eupl12g00988 269 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Eupl12g00988 269 FunFam RING-H2 finger protein ATL3 76 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00988 Eupl-Chr12 25989249 25990155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00988 15 151 Rapid Response to Elicitors AT3G16720 64.286 9.03e-52 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00988 - - nnu:104598898 245.743