Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00984 ATGCAGTCATTTAAGGGATATGGGAACGTCTCAGGGGACCAAGCAGGAAGGAACAATGGACAGAAGAAGAGAATCGCTGTGATAAGTGTCTCTTCTTTAATCCTGGTGGCCATGGTCGTCGCGGTGGCTGTCGGTATCAACCACAGCCACAACTCGCCAGCCCAAGGTGATGGGTCTGGCGATCGCGATATGCAAACTTCAATGAAAGCAATTCAGGCTATCTGTCAACCTACTGATTTCAAGCAAACCTGTATCGACAGCCTTTCCTCCGCTGCCGGAAACACCAGCGACCCGAAAGAACTCGTTAAGGTCGCATTCAAGGTTGCCATGGACCACATTACTCAGGCTGTCAAACGCTCGTCTGTCCTTCAAGAACTGGAGAAGGACCCAAGAAGCACACAGGCTCTCCAAAACTGCCGGGAGCTCATGGACTATGCCATTGATGATCTCAAGAACTCTTTTGATGAACTAGGTAAATTAGATATGAGCAAGGTCGATGAATTACTCGCTGACCTCAAAATCTGGCTCAGCGCTTCCATCACTTACCAAGAAACATGCTTGGATGGCTTCCAGAACACAACGGGTAAAGCCGGAGAGTCCATGAAGAAAGCGTTGAAGAGCTCCGGTGAGCTCACTAGAAATGCTCTCGCCATTGTTACAGAGATCGCCTCAGTCCTTAGCTCCTTAAATATCCCGCTCCTCAGCCGTAGGCTCCTTTCAGAGGAATCAGAGGATGGTTTCCCTACGTGGGTTTCCGCTGGGAAACGCAGACTCCTAAAAGCTAATCCATCAAACATCAGAGCCAACGTCGTTGTAGCGAAGGATGGGAGTGGTAAGTACAAGACCATCGCTGAAGCAATAAATGAAATCCCCAAGAAGAGCACCGTGACCTTCGTTATTCATATTAAGGAGGGAATCTATCACGAACATGTGTTGCTCAACAAGAGCATGACCCATGTGATGTTTATCGGAGATGGCCCCACAAAGACTAAGATCACGGGCAACAGGAACTTCATTGATGGGATCCCCACCTTCAAGACTGCAACAGTTGCGGTTGTTGGAGAAGGTTTCATAGCCAAGAGCATCGGATTCGAGAACTCTGCAGGTGCTGCGAAGCATCAAGCTGTGGCATTGCGGGTGCAGTCGGATATGTCAATCTTCTACAACTGCCAGATAGACGGGTACCAAGACACGCTGTACACTCACACCCACCGCCAATTCTACCGTAAGTGCACCATCTCCGGTACAATCGATTTTATCTTTGGAAATGCAGCGGTCATATTCCAAAACTGCAAAATGGTGGTGAGGAAGCCAATGGACAACCAACAAACAATTGTTACAGCTCAAGGAAGGAAAGACAGGCGTGAGCCCACCGGAATCGTTCTCCAGGCCTGCTCCATCTCCGCAGACCCCCTGTACTTCCCTCTCAGGAAAAAGCTTCCAGCATACCTCGGTCGACCATGGAAGGAATACTCTAGGACCATTATCATGCAAACTAAGATCGACGACTTGATCCAGCCAGAAGGGTGGCTTCCATGGATGGGAGAATACGGTATCAACACTTGCTATTACGCTGAATACAAGAACAACGGTCCTGGTTCTGTCTTGACCAAGAGAGTGAAGTGGCCTGGAATCAAGACCGGTAGCCTCACCGCCCAAAGCATTCTAGAGTTCACTGCCAAACAATTCATCCAGGGTGATACCTGGGTCAAGCCTACCGGAGTTCCCTACACTCCTGGCATGTTGCCCATGTAG 1755 0.4934 MQSFKGYGNVSGDQAGRNNGQKKRIAVISVSSLILVAMVVAVAVGINHSHNSPAQGDGSGDRDMQTSMKAIQAICQPTDFKQTCIDSLSSAAGNTSDPKELVKVAFKVAMDHITQAVKRSSVLQELEKDPRSTQALQNCRELMDYAIDDLKNSFDELGKLDMSKVDELLADLKIWLSASITYQETCLDGFQNTTGKAGESMKKALKSSGELTRNALAIVTEIASVLSSLNIPLLSRRLLSEESEDGFPTWVSAGKRRLLKANPSNIRANVVVAKDGSGKYKTIAEAINEIPKKSTVTFVIHIKEGIYHEHVLLNKSMTHVMFIGDGPTKTKITGNRNFIDGIPTFKTATVAVVGEGFIAKSIGFENSAGAAKHQAVALRVQSDMSIFYNCQIDGYQDTLYTHTHRQFYRKCTISGTIDFIFGNAAVIFQNCKMVVRKPMDNQQTIVTAQGRKDRREPTGIVLQACSISADPLYFPLRKKLPAYLGRPWKEYSRTIIMQTKIDDLIQPEGWLPWMGEYGINTCYYAEYKNNGPGSVLTKRVKWPGIKTGSLTAQSILEFTAKQFIQGDTWVKPTGVPYTPGMLPM* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00984 584 CDD PMEI-like_3 73 224 - -
Eupl12g00984 584 SMART PMEI_2 66 218 IPR006501 GO:0004857
Eupl12g00984 584 FunFam Pectinesterase 263 581 - -
Eupl12g00984 584 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Eupl12g00984 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 66 223 IPR035513 -
Eupl12g00984 584 FunFam Pectinesterase 67 223 - -
Eupl12g00984 584 NCBIfam pectinesterase inhibitor domain 53 221 IPR006501 GO:0004857
Eupl12g00984 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 222 IPR035513 -
Eupl12g00984 584 Pfam Pectinesterase 269 567 IPR000070 GO:0030599|GO:0042545
Eupl12g00984 584 Gene3D - 263 581 IPR012334 -
Eupl12g00984 584 Pfam Plant invertase/pectin methylesterase inhibitor 70 218 IPR006501 GO:0004857
Eupl12g00984 584 SUPERFAMILY Pectin lyase-like 266 580 IPR011050 -
Eupl12g00984 584 PANTHER PECTINESTERASE 32 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00984 Eupl-Chr12 25955081 25957734 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00984 21 582 Carbohydrate Esterase AT3G05610 56.460 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00984 K01051 - nnu:104598379 812.757