Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00983 ATGGCTTCTAAGCTCTCTTCTCTCCTCTCCATCCCTCTCTTTGCTACTTTCCTTCTCTTCTTCTTCTTCTTCTCTCCTCTTGCAAATGCCGTCCCTATGTCCATGCCTGTCGCACCAGATGTAGTTTGCAATTCCACCCTTTATCCAAAGTTCTGCAAATCCATCCTCCCGCATAATGAAACGAGCAACATCTACGACTATGGACAGTTTTCTGTCCGTCGATCTTTATCAACTGCAAGGAAGTTTTTAGCTTTGATCAACAAGTATCTTCGACGCCGGTCGACTTTGTCAAAAACTGCACTTCGAGCCCTCGAAGACTGCTCGCTCCTTGCAGGACTAAATATGGATTTCTTGTTAAGCACCACCGAAACTCTCAATTCTACTAAACCACTGCTTAGCTTGCAGACTGACGACCTGCAAACCTTGCTTAGTGCCATATTGACTAACCAACAAACTTGTTTCGATGGTCTTCAAGCGACTGCGTCAGCTTGGAGTGTTAGGGAAGGGCTTTACACCCCTCTTTCTAATGGAACCAAGCTGTATAGTGTTTCTCTAGCAATTTTCACCCGTGGTTGGGTTCACAGCAAGAAGAAAAAGAAGTCTAAACCCGAGAGGAAGCTCTTGTTTTCGGACATGGAAGTCCTTCAACATGGTCATTTACCTTTGAGAATGTCAAGTCGCAACCGTGAGATCTTTGAGTCAGTAAGCAGAAGGAAGCTTCTCCAAACTACAACTGCTAATGATATCTTGGTGAATAACATCGTGGTCGTGAATCAGGACGGAAGCGGAGATTTCATCACTATCAATGATGCTGTCACTGCTGCACCAAACAACACGGACATTAACGATGGCTACTTTCTGATTTACATAGTTGCTGGTATTTACCAGGAGTATGTATCCATTGTTAAGAACAAGAAGAACTTGATGATGATCGGAGATGGTATCAACCAGACTGTGATTACAGGCAACCGAAGCTTCGTAGATGGGTGGACTACATTCAATTCTGCAACCTTTGCTGTAGTTGGACAAGCGTTCGTTGCAGTAGGTATTACTTTCAGCAATACTGCCGGGGCGATCAAGCATCAAGCGGTGGCAGTTCGAAATGGGGCCGACTTGTCGAGTTTCTACAGTTGTAGCTTTGAAGGGTATCAGGACACCTTGTATACCCACTCCCTAAGGCAATTCTATAGAGAATGCGACATATATGGGACAGTAGATTTTATATTCGGTAATGCAGCTGTTGTTTTTCAAAACTGCAATATTTACGCAAGGCTACCCATGAAGGGTCAGTTTAATGCCCTGACTGCCCAAGGTAGAACGGATCCGAATCAGAACACGGGTACTTCGATTCATAATTGTAGTATCAAGGCAACTTCAGACTTGGCTTCAAGCAATGGTACTACTAAGACATACTTAGGAAGACCATGGAAGGAATACTCAAGGACTGTTTACATGCAATCGTTCATCGATAACTTGATCGATCCATCGGGTTGGACTCCATGGGATGGGGATTTCGCTCTAAGTACGTTGTATTATGCTGAATACAACAATAGTGGACCCGGATCAAACACTACTAAGAGAGTTAAGTGGCCTGGTTACCATGTGATCATAAACGCTAGAGACGCGGCCAACTTCACTGTTTCAAACTTTACGTTGGGGGATGATTGGTTACCTGCAACAGGAGTGCCTTACAATGGCGGCTTACTATGA 1710 0.4433 MASKLSSLLSIPLFATFLLFFFFFSPLANAVPMSMPVAPDVVCNSTLYPKFCKSILPHNETSNIYDYGQFSVRRSLSTARKFLALINKYLRRRSTLSKTALRALEDCSLLAGLNMDFLLSTTETLNSTKPLLSLQTDDLQTLLSAILTNQQTCFDGLQATASAWSVREGLYTPLSNGTKLYSVSLAIFTRGWVHSKKKKKSKPERKLLFSDMEVLQHGHLPLRMSSRNREIFESVSRRKLLQTTTANDILVNNIVVVNQDGSGDFITINDAVTAAPNNTDINDGYFLIYIVAGIYQEYVSIVKNKKNLMMIGDGINQTVITGNRSFVDGWTTFNSATFAVVGQAFVAVGITFSNTAGAIKHQAVAVRNGADLSSFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIYARLPMKGQFNALTAQGRTDPNQNTGTSIHNCSIKATSDLASSNGTTKTYLGRPWKEYSRTVYMQSFIDNLIDPSGWTPWDGDFALSTLYYAEYNNSGPGSNTTKRVKWPGYHVIINARDAANFTVSNFTLGDDWLPATGVPYNGGLL* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00983 569 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Eupl12g00983 569 SMART PMEI_2 31 187 IPR006501 GO:0004857
Eupl12g00983 569 Gene3D - 249 568 IPR012334 -
Eupl12g00983 569 CDD PMEI-like_3 42 192 - -
Eupl12g00983 569 SUPERFAMILY Pectin lyase-like 251 566 IPR011050 -
Eupl12g00983 569 Pfam Plant invertase/pectin methylesterase inhibitor 42 187 IPR006501 GO:0004857
Eupl12g00983 569 Pfam Pectinesterase 255 553 IPR000070 GO:0030599|GO:0042545
Eupl12g00983 569 PANTHER PECTINESTERASE 23 558 - -
Eupl12g00983 569 FunFam Pectinesterase 40 190 - -
Eupl12g00983 569 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 190 IPR035513 -
Eupl12g00983 569 NCBIfam pectinesterase inhibitor domain 13 161 IPR006501 GO:0004857
Eupl12g00983 569 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 190 IPR035513 -
Eupl12g00983 569 FunFam Pectinesterase 249 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00983 Eupl-Chr12 25948441 25950290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00983 12 569 Carbohydrate Esterase AT1G02810 59.483 0.0 698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00983 K01051 - nnu:104594609 822.387