Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl12g00968 | ATGGTGTCTCTGAAGCTCCAGAAGCGGCTCGCCGCAAGCGTCCTCAAGTGCGGGAGAGGGAAGGTTTGGCTCGACCCCAATGAGATCAACGAAATCTCCATGGCCAACTCCAGGCAAAACATAAGGAAGCTGGTGAAGGATGGTTTCGTCATCCGGAAACCAACTAAGATTCACTCTAGGTCTCGCGCTCGCCGAATGAAGGAGGCAAAGCGGAAGGGTCGTCATTCTGGATACGGTAAGCGCAAGGGTACCCGGGAGGCAAGGTTGCCCACAAAGATTCTCTGGATGAGGAGAATGCGTGTTCTCAGGCGCCTACTCCGCAAGTACAGGGAATCAAAGAAGATTGACAAGCACATGTATCATGACATGTACATGAAAGTGAAAGGTAATGTCTTTAAGAACAAGCGTGTGCTGATGGAGAGTATCCACAAGTCGAAGGCTGAGAAGGCGAGAGAGAAGACTTTGTCTGACCAGTTTGAGGCTAAGCGAGCTAAGAACAAGGCAAGCCGAGAAAGGAAATTTGCCAGGAGGGAGGAACGTTTGGCCCAGGGACCCGTAGAACGAGCACCACCAGCACCTGCACCTCAACCGGCTGAGGGGGGAGCTAAGAAAGGCAAGAAATGA | 624 | 0.5208 | MVSLKLQKRLAASVLKCGRGKVWLDPNEINEISMANSRQNIRKLVKDGFVIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERLAQGPVERAPPAPAPQPAEGGAKKGKK* | 208 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl12g00968 | 207 | Hamap | 50S ribosomal protein L19e [rpl19e]. | 3 | 149 | IPR000196 | GO:0003735|GO:0005840|GO:0006412 | |
| Eupl12g00968 | 207 | FunFam | Ribosomal protein L19 | 1 | 56 | - | - | |
| Eupl12g00968 | 207 | Gene3D | - | 57 | 187 | - | - | |
| Eupl12g00968 | 207 | FunFam | Ribosomal protein L19 | 57 | 190 | - | - | |
| Eupl12g00968 | 207 | MobiDBLite | consensus disorder prediction | 149 | 207 | - | - | |
| Eupl12g00968 | 207 | MobiDBLite | consensus disorder prediction | 57 | 85 | - | - | |
| Eupl12g00968 | 207 | CDD | Ribosomal_L19e_E | 4 | 167 | IPR033935 | GO:0003735|GO:0022625 | |
| Eupl12g00968 | 207 | SUPERFAMILY | Ribosomal protein L19 (L19e) | 3 | 144 | IPR035970 | GO:0003735|GO:0005840|GO:0006412 | |
| Eupl12g00968 | 207 | Gene3D | - | 2 | 56 | IPR015972 | GO:0003735|GO:0005840|GO:0006412 | |
| Eupl12g00968 | 207 | Pfam | Ribosomal protein L19e | 4 | 145 | IPR000196 | GO:0003735|GO:0005840|GO:0006412 | |
| Eupl12g00968 | 207 | PANTHER | 60S RIBOSOMAL PROTEIN L19 | 1 | 187 | IPR039547 | GO:0003723|GO:0003735|GO:0022625 | |
| Eupl12g00968 | 207 | SMART | Ribosomal_L19e_2 | 3 | 146 | IPR000196 | GO:0003735|GO:0005840|GO:0006412 | |
| Eupl12g00968 | 207 | MobiDBLite | consensus disorder prediction | 149 | 184 | - | - | |
| Eupl12g00968 | 207 | ProSitePatterns | Ribosomal protein L19e signature. | 7 | 26 | IPR023638 | - | |
| Eupl12g00968 | 207 | MobiDBLite | consensus disorder prediction | 57 | 79 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl12g00968 | Eupl-Chr12 | 25792199 | 25795503 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl12g00968 | 1 | 207 | Cytoplasmic Ribosomal Protein Gene Family | AT3G16780 | 86.124 | 5.25e-127 | 355 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl12g00968 | K02885 | - | vvi:100246855 | 358.992 |