Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00948 ATGGGGAGGGGAGGGAAATTCGTTTTAAAACGGAGCAAGAAGAGAAGGATTTGTTTTGATAAAAAGGGTTCGGATGATTCCGATGAGGATTATGTGTTGGAAGAAGATGAAGAATCTAATGATTCGGAGGGATCTATCGCTTCGTCTGCTGAAAACTCGTCGGAGGGGAGCTTTGATTTCGAGGCCATAAGTATTGGCTCTGACGAAGAGGAGGAGGAGGAGAGAAAGGTTGTTAGATCCAAAAATTTGAAACCCAAAAAGGATTCTTTGGGTTGGAAAAGAACTAGGGTTAAACGGCCTAGGGTTTCATATGATGAAGAAGAGGACTATGATTTTGATTATGGGGATGATGATGATGATGAAGTGGAAGAAGAGGAGAGAAATGTTGCTAGATTGAAAGATTTGAAACCCAAAAAGGGTTCTTTGGGTTGGAAAAGAACTAGGGTTAAACGGCCTAGGGTTTCAGATGATGAAGAAGAGGACTATGATTTTGATGATGGGGATTATGATGATGAAGTGGAGGAGGAGGAGGACGAGGACGAGGACGAGGAGGAGAGAAAGGTCGTTAGATCGAAAGATTTCAAACCCCGAAAGGGTTCGTTGGGTTGGAAAAGGACTAGGGCTAAACGGTCGCCTAAGAGATATAGGGTTTCAGATGATGAAGAAGAGGACTATGATTTTGATGATGGAGATGATGAGGAATTCACACCTGATGGGATTGATTGTGGAGATGAGGAGGAAGAATTGCAGGTAAAGAAGAAGAGTGATAAGGTAAGGAGGCGAGTGTCTCCTAAAAAGGTCTCAGCGAGAAGCCGGAAAAGAAAGAGGAAATCTAAGGTTTCAAAGAAGCCTTTGAGAAATAATCAAAGGAGGAGATTGGTGGTGAGGAGATCAGCCGACGATGACTTTGTAGATGACAATAAGGTTGTGAAGGAGAAGAGGAAGAAGAATACTAGGAGAACAAACAAGAGATTGGTCGTGCATTCGGATTCAGATTTTGTGTCTTCTGGGTCTTCGGATTTGGAGTATACGATCTCTGACGAGGAAAAGGAGCTGTTGAGAGAAGCCACCAGTTTTTGTGGGAATTTTCGGACTTGCATTAGGAATTCATCTTTGTCAAAGAGATTGCAAGACAATGGAGCTTCGGACTGTCATCAACAGAAACCAATGGAAAGAAAGGGGAAGGAGAAGGTCAATGATTTACGGAATGATACAGGGAAGCAAGTGTGTGGAATCTGCTTATCAGAAGAAGGGAAGGGGACAATCCGGGGAACATTAAACTGTTGCAGTCATTATTTCTGTTTTGCTTGCATAATGGAGTGGTCGAAGGTAGAATCTCGTTGCCCTTTCTGCAAACAGAGGTTCGTGACAATTCATAAGCCTACAAGATCAAACATAGGAATTGATCTAAGGAATTCGGTGATACGGGTCCCGAAACGTGATCAGGTTTATCGACCTTCTGAAGAAGAGTTGAGGGGGTATCTTGATCCGTATGCAAATGTGGTTTGTATGGAATGCCAGCGAGGTGGGGATGATAACCTTATGTTACTCTGTGATATCTGCGATTCTCCTTCCCACACCTTTTGTGTTGGTCTAGGGCGGGAAGTACCCGAAGGTAATTGGTATTGTGAAGGTTGCAGGACCTCTGTGCCTGGATCCTCAAATTTACAAGTTCAAGATCCAGTGCCTGATCAGGGAACAAGCAATAGTAGCTTACCCACTGATCTACCCACCCGTAGAATTAATATAGAAGATTTTGATCCAACTCCCCAATATTCGGTGTCTATACCAGATCCATCTTATTCCCGTGGAATTGGGATTCTTCCATCTCCAAGATTTCCTGTCAGAGAAGATGTTCACGATGCATTGCCATCGCCATCTGGAACAGGGGCATCAACTCTCTCAGGAAGACGCAGGATACACCGTCAGATACACAATCTACTTTCTAACAATAGGATTAGCCAAATGGCTGGCAGAACTGATGGGATTTTACATACCAATGTAGAAACCAGGGTTGTTGACTCTGAAGTCGAGCAGTGTGAGGAAACAACTACTCGGCATCAGGAACATTAG 2073 0.4366 MGRGGKFVLKRSKKRRICFDKKGSDDSDEDYVLEEDEESNDSEGSIASSAENSSEGSFDFEAISIGSDEEEEEERKVVRSKNLKPKKDSLGWKRTRVKRPRVSYDEEEDYDFDYGDDDDDEVEEEERNVARLKDLKPKKGSLGWKRTRVKRPRVSDDEEEDYDFDDGDYDDEVEEEEDEDEDEEERKVVRSKDFKPRKGSLGWKRTRAKRSPKRYRVSDDEEEDYDFDDGDDEEFTPDGIDCGDEEEELQVKKKSDKVRRRVSPKKVSARSRKRKRKSKVSKKPLRNNQRRRLVVRRSADDDFVDDNKVVKEKRKKNTRRTNKRLVVHSDSDFVSSGSSDLEYTISDEEKELLREATSFCGNFRTCIRNSSLSKRLQDNGASDCHQQKPMERKGKEKVNDLRNDTGKQVCGICLSEEGKGTIRGTLNCCSHYFCFACIMEWSKVESRCPFCKQRFVTIHKPTRSNIGIDLRNSVIRVPKRDQVYRPSEEELRGYLDPYANVVCMECQRGGDDNLMLLCDICDSPSHTFCVGLGREVPEGNWYCEGCRTSVPGSSNLQVQDPVPDQGTSNSSLPTDLPTRRINIEDFDPTPQYSVSIPDPSYSRGIGILPSPRFPVREDVHDALPSPSGTGASTLSGRRRIHRQIHNLLSNNRISQMAGRTDGILHTNVETRVVDSEVEQCEETTTRHQEH* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00948 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 477 551 IPR013083 -
Eupl12g00948 690 PANTHER F18C1.6 PROTEIN 146 676 - -
Eupl12g00948 690 ProSiteProfiles Zinc finger PHD-type profile. 500 549 IPR019787 -
Eupl12g00948 690 MobiDBLite consensus disorder prediction 256 291 - -
Eupl12g00948 690 MobiDBLite consensus disorder prediction 20 82 - -
Eupl12g00948 690 MobiDBLite consensus disorder prediction 221 245 - -
Eupl12g00948 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 387 476 IPR013083 -
Eupl12g00948 690 ProSitePatterns Zinc finger RING-type signature. 429 438 IPR017907 -
Eupl12g00948 690 MobiDBLite consensus disorder prediction 107 125 - -
Eupl12g00948 690 SMART ring_2 410 451 IPR001841 -
Eupl12g00948 690 Pfam Ring finger domain 409 452 IPR001841 -
Eupl12g00948 690 Pfam PHD-finger 503 548 IPR019787 -
Eupl12g00948 690 MobiDBLite consensus disorder prediction 376 398 - -
Eupl12g00948 690 SMART PHD_3 502 547 IPR001965 -
Eupl12g00948 690 MobiDBLite consensus disorder prediction 553 577 - -
Eupl12g00948 690 MobiDBLite consensus disorder prediction 158 184 - -
Eupl12g00948 690 CDD RING-HC_Topors 408 455 - -
Eupl12g00948 690 ProSiteProfiles Zinc finger RING-type profile. 410 452 IPR001841 -
Eupl12g00948 690 MobiDBLite consensus disorder prediction 43 60 - -
Eupl12g00948 690 SUPERFAMILY RING/U-box 409 458 - -
Eupl12g00948 690 MobiDBLite consensus disorder prediction 95 291 - -
Eupl12g00948 690 MobiDBLite consensus disorder prediction 126 141 - -
Eupl12g00948 690 MobiDBLite consensus disorder prediction 553 598 - -
Eupl12g00948 690 SUPERFAMILY FYVE/PHD zinc finger 477 547 IPR011011 -
Eupl12g00948 690 MobiDBLite consensus disorder prediction 185 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00948 Eupl-Chr12 25577031 25580990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00948 497 546 C2H2 Transcription Factor Family AT3G01460 46.154 1.44e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl12g00948 PHD 1.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00948 - - nnu:104588985 568.155