Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00945 ATGGCGATGAGAAATCGAACTCCTCTGTACAGAAGGTACAGAGATGCCTTGAAGAGTGTCCGTGTTCCGACGTTCTCTTCGTCTCAGTCTTCTTCTTCTGCTTCGGGCGGTCCGGTGATCGAATTGGTCAACACTTCGCTTCTGCACCCAAATCGGGCCTATTCTCCACTCAGTACGGAGGATCCAGGGAGTTCCAGTGGTGCACTTACAGTGGGTCTACCTCCAGCTTGGGTGGATGTTTCCGAAGAAATATCAGGAAATATGCAACGTGCACGGATCAAAATGGCAGAGTTAATCAAGGCTCACTCCAAGGCTTTAATGCCCTCCTTTGGAGATGGCAGAGAAGATCAGCACATGATCGAGGCTCTTACCCAAGAGATAACAGATCTTTTGAAAAGGTCTGAAAAGAGATTACAGAAACTTTCTGCAAGTGGGCCTTCTGAGGATTCAAATGTTAGAAAAAATGTACAGCGTTCTCTTGCTATTGACCTTCAGAACCTTTCAGTGGAGCTTCGAAAGAAACAGTCGACTTATTTGAAGCGTCTCCGGCAGCAAAAAGAGGGTCAAGATGGGGTTGACTTGGAGATGAATTTGAATGAAAATATATCCAAACTGGAAGACGATGGCTTTAGCGATATGGGTTTTAATGAGCACCAAATGTCCAAGTTAAAGAAAAGCGAGGCATTCACGGTGGAAAGGGAGAGAGAGATTAATCAGGTTGTAGAATCGGTAAACGAGCTAGCTCAAATCATGAAGGATCTCTCAGTCCTTGTGATAGACCAGGGGACGATCGTTGATCGGATAGACTACAACATTCAGAATGTCGCAGCCTCAGTCGAGCAGGGCTATAAACAATTGGAGAAGGCAGAGAGAACACAGAAAAAAGGGGGAATGGTTATGTGTGTCACGGTGCTCATCATCATGTGCTTCATCATGCTGGTCCTCCTGATCCTCAAGGAGATATTCTTGTGA 972 0.4578 MAMRNRTPLYRRYRDALKSVRVPTFSSSQSSSSASGGPVIELVNTSLLHPNRAYSPLSTEDPGSSSGALTVGLPPAWVDVSEEISGNMQRARIKMAELIKAHSKALMPSFGDGREDQHMIEALTQEITDLLKRSEKRLQKLSASGPSEDSNVRKNVQRSLAIDLQNLSVELRKKQSTYLKRLRQQKEGQDGVDLEMNLNENISKLEDDGFSDMGFNEHQMSKLKKSEAFTVEREREINQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVAASVEQGYKQLEKAERTQKKGGMVMCVTVLIIMCFIMLVLLILKEIFL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00945 323 FunFam Syntaxin-43 74 281 - -
Eupl12g00945 323 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 227 289 IPR000727 -
Eupl12g00945 323 SUPERFAMILY t-snare proteins 73 282 IPR010989 GO:0016020|GO:0016192
Eupl12g00945 323 CDD SNARE_syntaxin16 232 288 - -
Eupl12g00945 323 ProSitePatterns Syntaxin / epimorphin family signature. 233 272 IPR006012 GO:0005484|GO:0006886|GO:0016020
Eupl12g00945 323 Gene3D - 74 281 - -
Eupl12g00945 323 Pfam SNARE domain 263 315 IPR000727 -
Eupl12g00945 323 SMART SynN_4 68 183 IPR006011 GO:0016020
Eupl12g00945 323 PANTHER SYNTAXIN 80 308 IPR045242 -
Eupl12g00945 323 SMART tSNARE_6 222 289 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00945 Eupl-Chr12 25531031 25541799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00945 1 323 SNARE and Associated Proteins AT5G26980 75.692 1.18e-177 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00945 K08489 - mof:131154135 525.783