Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00943 ATGAATACAGATAACGGAGGAGGAGGAGGAGGAGGAGGAGCGATGTTAAGGGCGAACTTGAACGCTTGTAGGAAGGCGAGTAATGGGGGATCTAATCAGTTCCCTGCTGGTCTCCGGGTTCTGGTCGTTGATGATGATCAGACGTGTCTCAAGATTCTAGAGAGGATGCTTCAGAACTGCCTCTATGAAGTTACCACATGTTCCGGGGCAGTGGTTGCTTTATCTATGCTTCGAGAGAGAAAATATGGGTTCGATCTTGTTATAAGTGATGTCCACATGCCCGATATGGACGGATTTAAACTCCTGGAGCACATTGGGCTTGAGATGGACCTGCCCGTTATCATGATGTCAGTGGATGATGGAAAAGACGTAGTTATGAAGGGCGTTACACATGGAGCATGCGATTACCTGATCAAACCAGTTAGGATAGAGGCGATAAAAAATATATGGCAGCATGTGGTCCGGAAGAGGAGGAATGAGTTGAAGGAATTGGAGCACTCGGGGAGCATGGTGGATAATGACCAACAACGAAAACCATCTGATGACACAGATTATGCATCCTCAGCGAATGAAGGGAGTTGGAGAAACTTAAAGAGGAGGAAGGAAGAGGAAGACGAAGTGGATGACAGGGATGATACTTCCGCATTGAAGAAACCGCGCGTGGTCTGGTCAGTTGAGCTCCATCAACAATTTGTCGCAGCTGTGAACCAATTAGGCATTGATAAGGCTGTTCCTAAGAAAATTCTTGAGCTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTTCAGAAATTTCGCTTGTATCTTAGAAGAATCAGTGGAGTATCTCAGCATCAGAGTGGACTCAATATGCCCTTTATTTATCCCCCAGAAGCAAATTTCAGGCCAATGTCATCACTCGATGGGCTCAATCTTCAATCTTTTGCCGTCTCAGGTCAACTCCCAGCGCAGAGTCTTTCCACACTACAAGCAGGAGGACTTGGGAGATCAACTGCAAACACTGGCATAGGCATGCCACTTGGTGATCAAAGGAACCTTTTTAGCTCTGAAACATCGAAGTTAAGGTTTGAAGTGGGACAACAGCAACTGAGCAACACGAATAAACAAGTAAACTTACTTCATGGGCTCCCAACCACCATGGAACCAAAGCAGCTGGCCCATTTGCACCAGCCTTGCCAGTCATTTGGGAACACGAGTCTCCAAGTAGGCGAGGGACCCATGTGCTTTCTAAACACACCAACAACGTCTCCAGAAACAGTCTCATCGGGCCATGCAGACACTGTACATGGAAACCAGAGTAGCTCTCTAATGGTGCAGATGGTTCAAACTCGGTCGAGGGGGCAGTTATTGAATGAGACTGCAGGTGGTCATGCTTCTGGGCTTCCGTCATCCATAGGACAGCAAATAATCTTGAATGGGATTGCAGGTCGGGACATGGGAAGAAATGGGATTGTTGTAAATGGTAGAGGAGCTGCCTACAATCCAGTTTCCCAAGCTGCTTCTGTGGTTGATTTTCCGATGAACCGCGTTACAGTATTGCCTGGAAATGGTTTTCCTCATGATAATACTGCAGGGTTATCTAGTCTAACATCAACAGGGATGTTTCAAGATGGAGGAAGTTTGGAAGTAAAAGGACCGAGAGGCTTTGCTCCAAGTTATGACATCTTTAATGAACTTCGCCAGAACAAAACCCAAGACTGGGAGTTAAATATGGGTCTAACTTTTGAGGCTGCTCAACATGCCAACTCTGTACAGGGTAACCTCAACTCCTTTCCGTCAGTTTTGGGTCATCAAGGGTTTGCGTCTAACCAAAAGAATGGACAGAACAGTGATACATATATTGTTGGCAAACCAGTGGCCCCCCTCAGAGAAGAAAATGAACATGGGAACCCAGAAATCATTGCGCGATCCCATAACAACCTCCTGGATGACAATTTGTCGAGGGTAAAGGCTGGAAGGTTACCTGATTTGAGCTGTGAGAACATGCTTCTTGCCGAACACTTTGGTCAGGATGATCTCATGAGTGCACTTTTCAAACAGCAGCAAGAAGGTGCTGCACCAGTTGAAACTGAGTTCAACTTTGAAGGGTCTGCCATGGATAATATTCCGGTGTAG 2127 0.464 MNTDNGGGGGGGGAMLRANLNACRKASNGGSNQFPAGLRVLVVDDDQTCLKILERMLQNCLYEVTTCSGAVVALSMLRERKYGFDLVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSVDDGKDVVMKGVTHGACDYLIKPVRIEAIKNIWQHVVRKRRNELKELEHSGSMVDNDQQRKPSDDTDYASSANEGSWRNLKRRKEEEDEVDDRDDTSALKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKFRLYLRRISGVSQHQSGLNMPFIYPPEANFRPMSSLDGLNLQSFAVSGQLPAQSLSTLQAGGLGRSTANTGIGMPLGDQRNLFSSETSKLRFEVGQQQLSNTNKQVNLLHGLPTTMEPKQLAHLHQPCQSFGNTSLQVGEGPMCFLNTPTTSPETVSSGHADTVHGNQSSSLMVQMVQTRSRGQLLNETAGGHASGLPSSIGQQIILNGIAGRDMGRNGIVVNGRGAAYNPVSQAASVVDFPMNRVTVLPGNGFPHDNTAGLSSLTSTGMFQDGGSLEVKGPRGFAPSYDIFNELRQNKTQDWELNMGLTFEAAQHANSVQGNLNSFPSVLGHQGFASNQKNGQNSDTYIVGKPVAPLREENEHGNPEIIARSHNNLLDDNLSRVKAGRLPDLSCENMLLAEHFGQDDLMSALFKQQQEGAAPVETEFNFEGSAMDNIPV* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00943 708 MobiDBLite consensus disorder prediction 194 213 - -
Eupl12g00943 708 SUPERFAMILY Homeodomain-like 216 275 IPR009057 -
Eupl12g00943 708 CDD REC_typeB_ARR-like 40 154 - -
Eupl12g00943 708 NCBIfam myb-like DNA-binding domain, SHAQKYF class 218 271 IPR006447 GO:0003677
Eupl12g00943 708 Pfam Response regulator receiver domain 40 148 IPR001789 GO:0000160
Eupl12g00943 708 Gene3D - 38 173 - -
Eupl12g00943 708 MobiDBLite consensus disorder prediction 165 181 - -
Eupl12g00943 708 MobiDBLite consensus disorder prediction 165 213 - -
Eupl12g00943 708 FunFam Two-component response regulator 214 277 - -
Eupl12g00943 708 Pfam Myb-like DNA-binding domain 220 268 IPR001005 -
Eupl12g00943 708 FunFam Two-component response regulator 38 175 - -
Eupl12g00943 708 SUPERFAMILY CheY-like 37 165 IPR011006 -
Eupl12g00943 708 Gene3D - 215 277 - -
Eupl12g00943 708 ProSiteProfiles Response regulatory domain profile. 39 154 IPR001789 GO:0000160
Eupl12g00943 708 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 217 274 IPR017930 -
Eupl12g00943 708 PIRSF RR_ARR_type-B 18 705 IPR017053 GO:0003677|GO:0003700|GO:0009736
Eupl12g00943 708 PANTHER TWO-COMPONENT RESPONSE REGULATOR 38 366 IPR045279 GO:0009736
Eupl12g00943 708 SMART REC_2 38 150 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00943 Eupl-Chr12 25501597 25511871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00943 72 708 Response Regulator Gene Family AT3G16857 43.870 3.72e-143 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Eupl12g00943 Response_reg 6.8e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00943 - K14491 nnu:104605149 923.694