Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00940 ATGGCGAAAGAAGTCGCTCTTGCTGCTGCAAAGCCCAAACGGGTCCCAGAGAAGACAACGAAGCCCAAGTCGAAACCCACAAAGCAACCTTCAGCCCTCCATCCTCCCTATTTCCAGATGATATCTGAAGCGATATCTTCGCTGAAAGAACGAACGGGTTCGAGCCAACACGCCATCGCCAAGTCCATCGAGGACAAGTACAAAACTGGGCTTCCTCCAAATTTCAAGAAGCTTTTATCAATCCAGTTGAAGCATTTCGCGAAAACAGAGAAGCTGATGAAGGTGAAAAACTCCTTTAAGATCTCTTCATCTGAGAAGGTTAAGAGGGGAGGTGTTGAAATTAAAGAAAAAACGAAGAAGAAGAAGAACGAAGAGAAGAGTTCAACGAAACAGGTGATTAAGGTCTCGACGGTTAAAAAGACGGAGAAGGAATCGACGAAGGTGGCGAAGATGAAGAGATTAAGTCAAGTTAAGACTCCGGAGTGTTTGAAGAAGGTTGAGAAACCTAAGAAGAAGGATTTGAAGCCAAAATCTACTGCGAAGGTTTAA 549 0.4426 MAKEVALAAAKPKRVPEKTTKPKSKPTKQPSALHPPYFQMISEAISSLKERTGSSQHAIAKSIEDKYKTGLPPNFKKLLSIQLKHFAKTEKLMKVKNSFKISSSEKVKRGGVEIKEKTKKKKNEEKSSTKQVIKVSTVKKTEKESTKVAKMKRLSQVKTPECLKKVEKPKKKDLKPKSTAKV* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00940 182 MobiDBLite consensus disorder prediction 136 151 - -
Eupl12g00940 182 PRINTS Histone H5 signature 164 182 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Eupl12g00940 182 PRINTS Histone H5 signature 20 41 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Eupl12g00940 182 PRINTS Histone H5 signature 47 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Eupl12g00940 182 Gene3D - 27 129 IPR036388 -
Eupl12g00940 182 SUPERFAMILY "Winged helix" DNA-binding domain 31 110 IPR036390 -
Eupl12g00940 182 SMART h15plus2 31 98 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl12g00940 182 MobiDBLite consensus disorder prediction 10 24 - -
Eupl12g00940 182 MobiDBLite consensus disorder prediction 101 129 - -
Eupl12g00940 182 MobiDBLite consensus disorder prediction 1 36 - -
Eupl12g00940 182 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 33 103 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl12g00940 182 CDD H15 34 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl12g00940 182 PANTHER HISTONE H1 12 173 - -
Eupl12g00940 182 Pfam linker histone H1 and H5 family 34 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl12g00940 182 MobiDBLite consensus disorder prediction 157 182 - -
Eupl12g00940 182 MobiDBLite consensus disorder prediction 101 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00940 Eupl-Chr12 25474849 25475810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00940 40 155 Single Myb Histone (SMH) Gene Family AT1G49950 32.773 9.32e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00940 K11275 - msin:131225457 153.68