Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00938 ATGATGGATCTGAGTGAAAAAGGATCAGGGTCTGAAGACATGAATAGCAAGAAGAGCTGTGTTGATTGCCAGACTACGAAAACCCCTTTATGGAGAGGTGGTCCAGCTGGGCCGAAGTCTCTGTGTAATGCATGCGGGATCAGATACAGAAAGAAGAGGAGAGCTCTTCTGGGTCTGAACAAAGGAGGAGCGGAGGAGAAGAAAAAGCAGAGAAGAAGTAGTAATAACAATAAGCTTGGTGTGTCGTTGAAGCTGAGATTGCTGGCTTTGGGGAGAGAGGTGTTGTTGCAGAGATCGACGATGGAGAATCAGAGGAAGTTGGGAGAAGAAGAACAAGCGGCCGTACTGTTGATGGCTCTATCTTGTGGCTCTGTCTATGCTTAA 384 0.4714 MMDLSEKGSGSEDMNSKKSCVDCQTTKTPLWRGGPAGPKSLCNACGIRYRKKRRALLGLNKGGAEEKKKQRRSSNNNKLGVSLKLRLLALGREVLLQRSTMENQRKLGEEEQAAVLLMALSCGSVYA* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00938 127 Gene3D - 15 79 IPR013088 GO:0006355|GO:0008270
Eupl12g00938 127 MobiDBLite consensus disorder prediction 1 20 - -
Eupl12g00938 127 SMART GATA_3 14 64 IPR000679 GO:0006355|GO:0043565
Eupl12g00938 127 CDD ZnF_GATA 19 54 IPR000679 GO:0006355|GO:0043565
Eupl12g00938 127 MobiDBLite consensus disorder prediction 58 73 - -
Eupl12g00938 127 ProSitePatterns GATA-type zinc finger domain. 20 45 IPR000679 GO:0006355|GO:0043565
Eupl12g00938 127 PANTHER OS01G0976800 PROTEIN 7 127 - -
Eupl12g00938 127 Pfam GATA zinc finger 20 54 IPR000679 GO:0006355|GO:0043565
Eupl12g00938 127 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 14 54 - -
Eupl12g00938 127 MobiDBLite consensus disorder prediction 58 78 - -
Eupl12g00938 127 ProSiteProfiles GATA-type zinc finger domain profile. 14 50 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00938 Eupl-Chr12 25455574 25456798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00938 15 127 C2C2-Gata Transcription Factor Family AT3G06740 68.103 3.31e-46 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl12g00938 GATA 4.3e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00938 - - nnu:104605140 184.496