Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00933 ATGGAAAACCCGTCTCGCCCTGCACCTTGGAGGGACCCATACGAGGTATTGGGAGTTTCTAGGGTTTCAACTGACTTGGAGATCAAAACTGCATACAGGAAGTTAGCTCTCAAGTATCATCCTGACAAGAATGTTGGCAATTTTGAAGCGTCAGAATTTTTTAAAGAGGTAGCTTATTCCTATAACATTCTATCTGATCCAGAGAGAAGAAGGTGTTATGACACTGTTGGGTTCGAGGTATTGTATTTGCAGTCTCATCTATCTATCATGGAAAGAATGTCCGAAGGAACAAGTCTAGTGATAGAAACTTCTGAAAATGGCACAGATTTATCACCAGATGATATTGGCACCATAGAGGAAGTACCTGAAGACACAATTTTATCGCGTCAAACTTCTGTAAATCTCGTACCATTTATTGGGCAAAGATTTGTTTCTCAAGATGCCGCCTACGAATTTTATTGCAGCTTTGCCAAGCAATGTGGTTTTTCAATCAGACGTCATCGTACTAGAGGGAAAGATGGGGTTGGTAGGGGAATTACGAGAAGGGATTTCACATGTCATCGAGGTGGATATCCGCAGTTAAAGCCCTCAGATGATGGCAAACTACAAAGAAATCGAAAATCATCACGTTGTGGATGTCAAGCATACATGCGAATTGTTAAAAGGGCAGATTTTGATGTCCCAGAATGGCGTATTACAGGCTTTAGTAACATACACAACCACGAACTGTTGAAATCATATGAAGTGCGTCTCCTTCCTGCCTACTGCAGCCTATCTGCAGATGACAAGAGTCGCATTTGCATGTTTGCCAAAGCTGGGATGTCGGTGCGGCAAATGCTCAGATTAATGGAGCTAGAGAAAGGCGTGAAGCTAGGTTGTTTAACATTTACGGAAATAGATGTTAGAAACCTTCTGCAGTCCTTCCGAAATGTGGATCGGGATAATGATGCTATTGACCTTATTGGAATGTGCAAAAACATTAAGGATGAAGATCCCAACTTCAAATATGAATTCAAGATAGATGCACATAACAGGTTGGAGCACATTGCCTGGTCTTATGCTTCATCTGTTCGATTATATGAAGATTTTGGAGATGCTGTGGTTTTTGACACAACTCACCGTTTGGATGCCTACGATATGCTTCTAGGGATCTGGGTTGGAGTGGACAATCATGGCATGAATTGTTTTTTTGGTTGTGTGCTTCTACGGGACGAAAATATGCAATCTTTTTCCTGGGCATTAAAGACATTTTTGGGCTTCATGAAGGGAAAGGCTCCACAAACAATTTTAACTGACCAAAACATGTGGCTGAAAGAGGCAATTGCTGCTGAAATGCCGAGTACCAAACATGCCTTTTGCATTTGGCACATCATTGCAAAGTTCTCAGATTGGTTTTCTGTACTGCTTGGTTCTCGATATGATAGTTGGAAAGCTGAGTTTCATCGGCTCTATAATTTGGACATGTTGGAGGACTTTGAAGTAGGATGGAGGGAGATGATTAATACATATGGATTCCATGGAAATAAGCACATTGTCAGCTTATATGCATTAAGGACATATTGGGCATTACCATTCTTGAGATGTTATTTCTTTGCAGGAATGACGAGTACATTCCAATCGGAGTCGATAAATGCTTTCATCCAACGGTTTTTGAGTGCACAGTCTCAACTTGATCATTTTGTAGAGCAAGTGGCTATTGTAGTTGATTTTAGAGATCAAGCAGGAGCAAAACAAAAGATGCAGCGGAAGCTCCACAAAGTCTGTCTCAAAACGGGGTCACCAATTGAATCACATGCTGCTACGGTTCTAACACCTTATGCCTTTTGTAAGCTCCAAGAAGAGCTTGTGTTGGCTCCACAGTATGCTTCGTTTCAGATAGAAGAAGGTTGTTTCCATGTGAGGCACCATACTCAAGCAGACGGTGGGTGCAAAGTGATTTGGGTCCCTGGCGAGGAACTCATTAGCTGTAGCTGCCATCAATTTGATTTTTCAGGGATCCTTTGTAGACATGTTCTTCGAGTCCTCTCAACAAATAACTGCTTCCATATTCCAGATCAATATCTACCCAATCGTTGGCGTGTTGTCAGCTCATATTCCGCAAAGACCTTCCGGACTACTACTGCAAGGGAACATGGAGAGAGAGTTCATGTGTTGCAGTCCATGGTTTCATCACTTGTTACAGAATCAGTTGAAACTGAGGACCGCCTCGAGTTTGCTTGTGAGCAAATTTCCATGGTGTTATCTCGCATTAAGGATTTTCTTCCTAGGTCATCCACACATGTTGGAACTGATATTGCTTACGATAGTCCCTCTGACTCTTTGATTCTACCGGAAGTGGAAGATTCTGATGGTATTGTTCAGAGTTTTGTGACTGGGAATCCACACGAGTCTCTCAGTTTCGGAAAGCTAAAAGAGAGAAGACCGAAAGATGGGGTTGAGTTCTCAAGGAAACGAAGGCGTTGCTCTGTGCCTTGCTGTGGGCAGTTTGGGCATGATGCGACTGATTGTCCATTGATGGGAGGTGAAGGTTTAACTGGAGATGGGCTTGGGTTCTTGTAG 2559 0.4256 MENPSRPAPWRDPYEVLGVSRVSTDLEIKTAYRKLALKYHPDKNVGNFEASEFFKEVAYSYNILSDPERRRCYDTVGFEVLYLQSHLSIMERMSEGTSLVIETSENGTDLSPDDIGTIEEVPEDTILSRQTSVNLVPFIGQRFVSQDAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGITRRDFTCHRGGYPQLKPSDDGKLQRNRKSSRCGCQAYMRIVKRADFDVPEWRITGFSNIHNHELLKSYEVRLLPAYCSLSADDKSRICMFAKAGMSVRQMLRLMELEKGVKLGCLTFTEIDVRNLLQSFRNVDRDNDAIDLIGMCKNIKDEDPNFKYEFKIDAHNRLEHIAWSYASSVRLYEDFGDAVVFDTTHRLDAYDMLLGIWVGVDNHGMNCFFGCVLLRDENMQSFSWALKTFLGFMKGKAPQTILTDQNMWLKEAIAAEMPSTKHAFCIWHIIAKFSDWFSVLLGSRYDSWKAEFHRLYNLDMLEDFEVGWREMINTYGFHGNKHIVSLYALRTYWALPFLRCYFFAGMTSTFQSESINAFIQRFLSAQSQLDHFVEQVAIVVDFRDQAGAKQKMQRKLHKVCLKTGSPIESHAATVLTPYAFCKLQEELVLAPQYASFQIEEGCFHVRHHTQADGGCKVIWVPGEELISCSCHQFDFSGILCRHVLRVLSTNNCFHIPDQYLPNRWRVVSSYSAKTFRTTTAREHGERVHVLQSMVSSLVTESVETEDRLEFACEQISMVLSRIKDFLPRSSTHVGTDIAYDSPSDSLILPEVEDSDGIVQSFVTGNPHESLSFGKLKERRPKDGVEFSRKRRRCSVPCCGQFGHDATDCPLMGGEGLTGDGLGFL* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00933 852 Pfam FAR1 DNA-binding domain 151 244 IPR004330 -
Eupl12g00933 852 SUPERFAMILY Chaperone J-domain 9 91 IPR036869 -
Eupl12g00933 852 ProSiteProfiles dnaJ domain profile. 12 77 IPR001623 -
Eupl12g00933 852 CDD DnaJ 12 66 IPR001623 -
Eupl12g00933 852 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 131 713 IPR031052 GO:0006355
Eupl12g00933 852 SMART dnaj_3 11 69 IPR001623 -
Eupl12g00933 852 SMART 26again6 654 681 IPR006564 GO:0008270
Eupl12g00933 852 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
Eupl12g00933 852 PRINTS DnaJ domain signature 14 32 IPR001623 -
Eupl12g00933 852 PRINTS DnaJ domain signature 49 69 IPR001623 -
Eupl12g00933 852 PRINTS DnaJ domain signature 32 47 IPR001623 -
Eupl12g00933 852 Pfam DnaJ domain 12 74 IPR001623 -
Eupl12g00933 852 ProSiteProfiles Zinc finger SWIM-type profile. 631 679 IPR007527 GO:0008270
Eupl12g00933 852 Pfam SWIM zinc finger 649 677 IPR007527 GO:0008270
Eupl12g00933 852 Gene3D DnaJ domain 3 94 IPR036869 -
Eupl12g00933 852 Pfam MULE transposase domain 367 459 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00933 Eupl-Chr12 25386923 25407806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00933 14 82 C2H2 Transcription Factor Family AT1G74250 41.892 4.80e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Eupl12g00933 MULE 2e-20 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00933 - - msin:131224770 1461.82