Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00930 ATGGATCACGACCTCGATGTAGAGAAGGCTCGGCTCCTTAGCTTAGCCCTCGATTTCGGCTTCGATGAAGAATCTTCGAAGAAGTGCTTAGATCGTCTGGTTCATCTCTACGGAGAAGATGGCAGAGATTTTATTACTGTGGAGCACTGTGGCGATGATTATCTTGCGGCATTGGCTGAATTTATGCAGGACAGTGAGGACTGGGATGATTTGCAAGCCATGGAATCAGAAGCTTGTGGAGCTTTAAGTAACATGTTTGAAAAAGAAGTTCCATATAATAATGAAGCAGAAAATGAAGATAATTTGGGAAGCTACATCAATGTTAGTGAAGATTCACATGAACCTCAGAATCAGGAAAATTTGATGAGGTTGGATTCATCTAGTGATGATGAAGACTCAGGTTCCAGAATCCTACACAAAAAGGATACTAGATCTAGTCCTTCCCTTTGTCTTGATAGAAAGAGCAGTTGTGCCTCCACACCAAGTTCGGGTAAACATTCTTCGAAATCCACTAGGTGTAAGAGCAGTATCATGCAAGGTTCGGTTTCATCAAAATCCAACCAGAGGACACGCCCCATCACACCAATACATGAACGTGAAACTCTGGGATATGAAGATCTACAGGCATTGGATGACATTGAACTGGCAAATGTTGTAATATTTGGTAATAAAACATTTCGAACTCTGCAGCATCAGGCTTGTAAAGCAGCCATGGCAAAGAGAGATTGCTTTATTCTAATGCCGACAGGAGGTGGGAAAAGTCTATGTTATCAGCTCCCAGCAACTCTTCAACCGGGTGTTACTGTTGTGGTATGCCCTCTACTTTCCCTCATTCAAGATCAGATTATCACACTGAACCTCAAGTTTGGAATACCAGCAACGTTTTTGAATTCTCAACAAACTGCTTCCCAAGCAACAGCAGTCCTTCGAGAGCTGAGAAAAAATGAACCATCATGCAAGCTTCTATACGTCACCCCTGAAAGGATTGCTGGCAACCTATCTTTTCTTGATATCCTAAGATGCCTGCACCAGAAGGGACAACTAGCTTTATTTGTCATTGATGAAGCACATTGTGTAAGCCAGTGGGGACATGATTTCCGTCCAGACTACAGAGGATTAGGATGCCTTAAACAGAATTTCCCAGATGTTCCAGTGATGGCATTAACTGCCACTGCAACCCAATCAGTTCAGAAGGATATCTTAAATGCTTTAAGGATTCCCCGAGCTCTTGTTCTTGAAACAAGCTTTGATAGACCAAACTTGAAATATGAAGTGCTGGGAAAGACGAAGGATTCATTGAAGCAGCTCGGTCAACTAATAAGAGACCGTTTCCAAAATATGTGCGGAATTGTTTACTGTCTTTCAAAAAGTGAGTGTGTAGATGTCTCCACTTATTTGAATGAGAAATGTAAGATAAAGACGGTATATTACCATGCTGGTTTAGCTGCTCGCCAAAGAGTTGCAGCTCAAAAGAAATGGCACACAGGAGAGGTGCATGTTGTATGTGCTACTATCGCTTTCGGAATGGGGATAGACAAACCTGACGTTCGGTTTGTTGTCCACAACACTTTGTCAAAGTCGATTGAAAGCTATTACCAAGAATCAGGGAGGGCAGGAAGAGATAATATTCCGGCGGTATGTATTGCTCTGTACCAGAAGAAAGATTTCAGTCGGGTTGTATGTATGTTACGTAGTGGACAAGGATGTAGAAGTGAAAGCTTTAAGATGAGCATGGATCAAGCACGGAAAATGCAACATTACTGTGAACTGAAGACTGAATGTAGAAGGCAAGCCCTTCTTGAACACTTTGGGGAGTCCTTCGACAGAAATGGTTGCATGTATGGTCCCAATCCCTGTGATAACTGCCTCAAAACCTCCAAATGA 1884 0.4241 MDHDLDVEKARLLSLALDFGFDEESSKKCLDRLVHLYGEDGRDFITVEHCGDDYLAALAEFMQDSEDWDDLQAMESEACGALSNMFEKEVPYNNEAENEDNLGSYINVSEDSHEPQNQENLMRLDSSSDDEDSGSRILHKKDTRSSPSLCLDRKSSCASTPSSGKHSSKSTRCKSSIMQGSVSSKSNQRTRPITPIHERETLGYEDLQALDDIELANVVIFGNKTFRTLQHQACKAAMAKRDCFILMPTGGGKSLCYQLPATLQPGVTVVVCPLLSLIQDQIITLNLKFGIPATFLNSQQTASQATAVLRELRKNEPSCKLLYVTPERIAGNLSFLDILRCLHQKGQLALFVIDEAHCVSQWGHDFRPDYRGLGCLKQNFPDVPVMALTATATQSVQKDILNALRIPRALVLETSFDRPNLKYEVLGKTKDSLKQLGQLIRDRFQNMCGIVYCLSKSECVDVSTYLNEKCKIKTVYYHAGLAARQRVAAQKKWHTGEVHVVCATIAFGMGIDKPDVRFVVHNTLSKSIESYYQESGRAGRDNIPAVCIALYQKKDFSRVVCMLRSGQGCRSESFKMSMDQARKMQHYCELKTECRRQALLEHFGESFDRNGCMYGPNPCDNCLKTSK* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00930 627 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 349 358 IPR002464 -
Eupl12g00930 627 SMART helicmild6 460 542 IPR001650 -
Eupl12g00930 627 Pfam RecQ zinc-binding 554 623 IPR032284 -
Eupl12g00930 627 FunFam ATP-dependent DNA helicase 418 625 - -
Eupl12g00930 627 MobiDBLite consensus disorder prediction 106 123 - -
Eupl12g00930 627 Pfam DEAD/DEAH box helicase 229 398 IPR011545 GO:0003676|GO:0005524
Eupl12g00930 627 CDD DEXHc_RecQ 220 417 - -
Eupl12g00930 627 NCBIfam RecQ family ATP-dependent DNA helicase 220 626 IPR004589 GO:0004386|GO:0006310
Eupl12g00930 627 MobiDBLite consensus disorder prediction 149 190 - -
Eupl12g00930 627 CDD SF2_C_RecQ 418 551 - -
Eupl12g00930 627 SMART ultradead3 222 426 IPR014001 -
Eupl12g00930 627 Pfam Helicase conserved C-terminal domain 434 541 IPR001650 -
Eupl12g00930 627 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 234 410 IPR014001 -
Eupl12g00930 627 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 432 582 IPR001650 -
Eupl12g00930 627 PANTHER DNA HELICASE RECQ FAMILY MEMBER 211 624 - -
Eupl12g00930 627 Gene3D - 418 626 IPR027417 -
Eupl12g00930 627 FunFam ATP-dependent DNA helicase 207 417 - -
Eupl12g00930 627 MobiDBLite consensus disorder prediction 106 190 - -
Eupl12g00930 627 Gene3D - 187 417 IPR027417 -
Eupl12g00930 627 MobiDBLite consensus disorder prediction 124 148 - -
Eupl12g00930 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 562 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00930 Eupl-Chr12 25333406 25342572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00930 450 560 Eukaryotic Initiation Factors Gene Family AT5G11170 25.225 1.12e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00930 K10899 - nnu:104598839 1022.69