Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00921 ATGGGAAGAGCACCATGCTGTGAGAAAGTGGGATTGAAGAAAGGGAGATGGACAGCTGAAGAAGATGAGATCTTGATGAAGTACATTGAAGCTAATGGAGAAGGTTCATGGAGGTCATTACCCAAGAATGCAGGTTTGTTAAGGTGTGGGAAGAGTTGCAGGCTTAGGTGGATTAATTACTTAAGATCTGACTTGAAGAGAGGAAACATCTCTTCTGAAGAGGAGGATACAATCATTAAGTTGCATACTTCTCTGGGTAATAGGTGGTCTGTGATAGCTGGGCACCTACCAGGAAGAACAGATAATGAGATAAAGAACTACTGGAACTCTCATTTGAGTAGGAGAATTCACAGCTTCAGGAGGCCAATTAGTACTGATGATGAAGCTTCACCGGTGGTCATGGACTTAGCCAAGATGGGTGGTGGGTCGAGCAAGCGAAAAGGCGGTCGGACAAGCCGGGCAGCCATGAAGAAGAAGAATGATATCCCTCCACGACCAGAGAAAAAGACTGTAATGAATTCCATTGTAGGGTTGGGTGAAGAAAGAGGAAGAATGATTGTAGGACCAAATAAGGAAGGAGATGAGAGAGAAAGGCCTGATTTTCCACTTCCTTGTCAGGATAATGGAGGAGGAAAGCTGGGTCCTAGTCAGGAGAAAGAAAGTGTAAGTGTAAGTGTAAGTGTAGAGTTGTGCCCTAATGAGGAGAGAGAAAATGAGATGTTGGGACCGTATGAAGGGCTAGATACTGAAATACTGTGCCCTAATGACATTATTATGGAGAATATGGTGTTGTGTCCAAGTGGGAGTTTGACATATAGTGAGGAGAGAGAAAGTGGGATGGTGGGTTCAAACAAAATGACAACAAGTGAGGAGGGAGAAAGTCATGTTTTTAGCTGCAGCAATGGAGAGAGTATTGAGTGGTATTCTTCTTCTTCAATAACTTCATGTTTTGAAGATCAATGGGCTGATTGGAATTGGGAGGGCGTTGTTGATGGTCATAAGCTATGGGAGGATGGAGAGCAGATATTGTCTTGGTTGGAAGACAGATCATGGTGA 1056 0.4375 MGRAPCCEKVGLKKGRWTAEEDEILMKYIEANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDLKRGNISSEEEDTIIKLHTSLGNRWSVIAGHLPGRTDNEIKNYWNSHLSRRIHSFRRPISTDDEASPVVMDLAKMGGGSSKRKGGRTSRAAMKKKNDIPPRPEKKTVMNSIVGLGEERGRMIVGPNKEGDERERPDFPLPCQDNGGGKLGPSQEKESVSVSVSVELCPNEERENEMLGPYEGLDTEILCPNDIIMENMVLCPSGSLTYSEERESGMVGSNKMTTSEEGESHVFSCSNGESIEWYSSSSITSCFEDQWADWNWEGVVDGHKLWEDGEQILSWLEDRSW* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00921 351 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl12g00921 351 CDD SANT 16 61 IPR001005 -
Eupl12g00921 351 MobiDBLite consensus disorder prediction 185 221 - -
Eupl12g00921 351 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Eupl12g00921 351 MobiDBLite consensus disorder prediction 137 168 - -
Eupl12g00921 351 MobiDBLite consensus disorder prediction 185 202 - -
Eupl12g00921 351 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl12g00921 351 SMART sant 66 114 IPR001005 -
Eupl12g00921 351 SMART sant 13 63 IPR001005 -
Eupl12g00921 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Eupl12g00921 351 CDD SANT 71 112 IPR001005 -
Eupl12g00921 351 FunFam Myb transcription factor 11 67 - -
Eupl12g00921 351 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 180 - -
Eupl12g00921 351 Gene3D - 70 131 - -
Eupl12g00921 351 Gene3D - 11 67 - -
Eupl12g00921 351 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Eupl12g00921 351 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl12g00921 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00921 Eupl-Chr12 25243200 25244837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00921 1 159 MYB Transcription Factor Family AT2G47460 72.050 2.02e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl12g00921 Myb_DNA-binding 8.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00921 K09422 - nnu:104605119 394.815