Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00907 ATGGAAAGTAGCGTCCCAGGGCGACTTGCAGGTTGGGAGACTCATGGGTTTCATACGATGGAAGATTTGGATGTTGAGAAGATAATGGAGGAAGCCACAACAAGGTGGCTGCGGCCAAATGAGATTCATGCAATATTATGCAACCACACCTATTTCATCATCCATGTCAAGCCACTGAACTTGCCAAAAAGTGGCACAATTGTAATGTTTGACCGTAAAATGCTAAGGAACTTCAGGAAAGATGGCCATAACTGGAAGAAGAAAAAGGATGGGAAGACTGTTAAGGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATCCATGTGTACTATGCACATGGCCTGGATAACCCCAACTTCGTACGCAGGTGTTACTGGCTACTTGATAAGAAACATGAGCACATAGTCCTTGTACATTATCGTGAAACATTGGAGCTGCAGGGTTCTCCGGTCAGACCTGTAAATTCAAATTCTGGTTCGACCTACTCAGACACATCTACTTCTAGGGTTTTTTCTGAAGAAACTGATTCTGGGGTAAATAATGCATTTTATGCAGGTTCTGGCACTTCTCTTGTTGGCGAATTAATTGAGCTTGGTCATAATATGACTGCAAGAAATCTTGAGAAGACACTTCGTGAAATTAACACACTTGACTGGGAAGAACTCTTGGTGTCAAATGATCCCAACGATTCTACTGCACCTAAAAAAGATGATGTTTCATGCTTTGAGCAACAGAATCAATATGAAATAAGTGACTCTGAAAGTAATGCGAACCTTCTCCTATCTAACAATATACCTGGGCCTATATCTTCTTTTGGGCATCCAACCAAACTGATGTCTAGAAGTGATGTTAAACTACCAACCAGTGCCTGCTTTCAGACAATGGGAAATCAAATGAATTCAAATGTCCAGAGAAAAGACTTTGAAACGGTTACAGGGGGTATGGACGAATCATTGGACATGTTTGTCAAAGGCAGTTTGCAAACTCAGGACAGTTTTGGAAGGTGGATGAACTACATCATGATTGACTCCCCAGGCTCATTAGATGATCTACCAGTTGAGTCCCCAGTGTCAACGGGTAATGAATCAAGCACATCCACTATTGTGGATCATCATCCATCTTCTATTCAAGAACAAGTTTTCAGTATAACCGATGTTTCACCTGCATGGGCTTTTTCAACAGAAGAAACAAAGGTCATAGTGATCGGATATTTTCACGGAGCACATTCTCATCTTGAAGAATCCAATTTATTTTGTGTCTTTGGCGATGTATGTGTTCCAGCAGAAATGGTTCAAGTTGGGGTATTTCGCTGTATGGCATTACCTCGTACCCCTGCGTTAGTAAATTTTTATTTGAGTCTTGATGGTCGTACTCCCATTAGCCAAGTTATGACTTTTGAATATCGCTCTCCTTTGATGGAGAACGGGTTGTTTACACAAGAAGATAGGTCTAAGTGGGAAGAGTTTCAAGTTCAGATAAGGCTTGCTCATCTGCTCTTCTCTACGACAAACAGCCTTAACATTCAATCAAGCAAGTTATCACCAAATGCCCTGAAGGAAGCAAAAAAATTTGCAGCGATAGCCTCTTCCATTGACAAAGATTGCGCATATTTGATCAAGTCAATTGGGAACAATGAGATCTCGTTTCCAACAGCCAAAAACAGTTTGTGTGATATCATTTTGAAGAACAAGTTACAGGAGTGGCTTTTGGAAAGAGTGATTGAAGGGGGTAAAGCAATTGTTCGTGATCGTAAAGGTCAAGGAATTATCCATTTGTGTGCTATCCTGGGTTATGGATGGGCTGTCCGTCCATATGCACATTCAGGCCACTCGTTAGATTTTCGGGATGCATTTGGATGGACGGCTCTGCACTGGGCTGCATTCTATGGGAGGGAAAAAATGGTTGCAGTTCTTTTATCTGCAGGGGCAGATCCCAGTGTAGTCACTGACCCCACTTCAGAATTCCCTGGTGGATGCACCGCTGCTGATCTTGCATCAAAAAATGGTTATGATGGCTTAGCCGCTTATCTTGCAGAAAAGGGATTAACAGCACATTTCAAGCGTATGTCCTTATCTGGAAATGTAAGTGGCTCCCTGCAAACTAGCACAACCGATTTGTCGAACTCCGGGAACCTCAACGAAGAGGAATCATGTCTGAAGGATATGTTGGCAGCATACCGAAATGCTGCTGATGCAGCAGCCCGTATACAGGCTGCATTCAGGGAGCGCACGCTAAAGCTACAGACAAAAGCACTTCAGTCTGCCGCACCAGAGACTGAAGCACACAGCATAATTGCTGCAATGAAGATTCAGCATGCCTTCCGCAACTATGACACACGGAAGAGGATGGCAGCTGCTGCCCGAATCCAACATAATTTCCGTACTTGGAAGATCCGAAAAGATTTTCTCAATATGCGTCGGCAGGCAATCAGAATTCAAGCTGCTTTCCGAGGCCACCAAGTTCGGAGGCAGTATCGCAAGATTATTTGGTCTGTTGGAGTTCTGGAGAAGGCGATTCTAAGGTGGCGTCACAAGAGAAGGGGCTTCCGTGGGCTTCAAGTCGAACCTATTGAAGCTGTCACAGTAGATCAGAAGCAAGAAAATGATGTGGAGGAGGACTTCTTCCGACTCAGCCGGAAGCAAGCCGAAGAGCGTGTTGAGAGATCAGTAGTGCGGGTCCAAGCTCTGTTCCGATCATTCCGAGCGCAGCAAGACTATCGGAGGATGAAGCTGACCTATGATCAAGCAAAGTTGGAATATGAAGAGCTTCTTGAACCTTAA 2787 0.4381 MESSVPGRLAGWETHGFHTMEDLDVEKIMEEATTRWLRPNEIHAILCNHTYFIIHVKPLNLPKSGTIVMFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGLDNPNFVRRCYWLLDKKHEHIVLVHYRETLELQGSPVRPVNSNSGSTYSDTSTSRVFSEETDSGVNNAFYAGSGTSLVGELIELGHNMTARNLEKTLREINTLDWEELLVSNDPNDSTAPKKDDVSCFEQQNQYEISDSESNANLLLSNNIPGPISSFGHPTKLMSRSDVKLPTSACFQTMGNQMNSNVQRKDFETVTGGMDESLDMFVKGSLQTQDSFGRWMNYIMIDSPGSLDDLPVESPVSTGNESSTSTIVDHHPSSIQEQVFSITDVSPAWAFSTEETKVIVIGYFHGAHSHLEESNLFCVFGDVCVPAEMVQVGVFRCMALPRTPALVNFYLSLDGRTPISQVMTFEYRSPLMENGLFTQEDRSKWEEFQVQIRLAHLLFSTTNSLNIQSSKLSPNALKEAKKFAAIASSIDKDCAYLIKSIGNNEISFPTAKNSLCDIILKNKLQEWLLERVIEGGKAIVRDRKGQGIIHLCAILGYGWAVRPYAHSGHSLDFRDAFGWTALHWAAFYGREKMVAVLLSAGADPSVVTDPTSEFPGGCTAADLASKNGYDGLAAYLAEKGLTAHFKRMSLSGNVSGSLQTSTTDLSNSGNLNEEESCLKDMLAAYRNAADAAARIQAAFRERTLKLQTKALQSAAPETEAHSIIAAMKIQHAFRNYDTRKRMAAAARIQHNFRTWKIRKDFLNMRRQAIRIQAAFRGHQVRRQYRKIIWSVGVLEKAILRWRHKRRGFRGLQVEPIEAVTVDQKQENDVEEDFFRLSRKQAEERVERSVVRVQALFRSFRAQQDYRRMKLTYDQAKLEYEELLEP* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00907 928 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 918 - -
Eupl12g00907 928 SUPERFAMILY E set domains 385 471 IPR014756 -
Eupl12g00907 928 Gene3D - 553 692 IPR036770 -
Eupl12g00907 928 Gene3D Immunoglobulins 378 474 IPR013783 -
Eupl12g00907 928 ProSiteProfiles Ankyrin repeat profile. 620 652 IPR002110 GO:0005515
Eupl12g00907 928 Pfam IQ calmodulin-binding motif 809 828 IPR000048 GO:0005515
Eupl12g00907 928 FunFam Calmodulin-binding transcription activator 2 784 831 - -
Eupl12g00907 928 SMART CG_1_2 28 146 IPR005559 GO:0003677
Eupl12g00907 928 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Eupl12g00907 928 ProSiteProfiles Ankyrin repeat region circular profile. 620 646 - -
Eupl12g00907 928 SUPERFAMILY Ankyrin repeat 583 687 IPR036770 -
Eupl12g00907 928 Pfam Ankyrin repeats (many copies) 622 672 IPR002110 GO:0005515
Eupl12g00907 928 ProSiteProfiles IQ motif profile. 784 810 IPR000048 GO:0005515
Eupl12g00907 928 SMART iq_5 783 805 IPR000048 GO:0005515
Eupl12g00907 928 SMART iq_5 806 828 IPR000048 GO:0005515
Eupl12g00907 928 SMART iq_5 887 909 IPR000048 GO:0005515
Eupl12g00907 928 Gene3D - 785 831 - -
Eupl12g00907 928 ProSiteProfiles IQ motif profile. 768 794 IPR000048 GO:0005515
Eupl12g00907 928 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Eupl12g00907 928 ProSiteProfiles IQ motif profile. 807 831 IPR000048 GO:0005515
Eupl12g00907 928 SMART ANK_2a 620 649 IPR002110 GO:0005515
Eupl12g00907 928 SMART ANK_2a 659 688 IPR002110 GO:0005515
Eupl12g00907 928 ProSiteProfiles IQ motif profile. 889 917 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00907 Eupl-Chr12 25010608 25043421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00907 28 922 CAMTA Transcription Factor Family AT3G16940 52.843 0.0 918
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Eupl12g00907 CG-1 1.4e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00907 K21596 - nnu:104598807 1246.49