Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00862 ATGGCTTTCTTCTGCTCTCAATTCCCACTTTCATCACTGCCACCTCACAGATCATCTGCAAGTCTGAAAACCTCAGTGTCAGATACCCTAAATCGAAGAACAATAACCCTAAAAACCTCTGAGATTTCGATTTCTTCATCAGTGAATCGCCATTACAGAGTTCTCCCGACCCTCCGCTGTTGCACGAGCTCAGGCTCTTCAATTGAGGACTTGAATTCCCCTTCAACGAGGATCTTCATCAAAGGACTGCCACAATCAACATCTGAGGGATGCTTGGTCACGGAATTTTCGCGTTTCGGGAAAGTTAATGGAGTTAAAATCATAACAGGTAGAAAGTCTAGACAATCTTTGGGACTTGCATATGTTTGGTTTACCAGTGAAGAGTCTGCCCAATTGGCTGCCAAAGAGATGGATGGAAAGGTTTATTGTTGTTACATTTGCAAGGCCTGA 450 0.4378 MAFFCSQFPLSSLPPHRSSASLKTSVSDTLNRRTITLKTSEISISSSVNRHYRVLPTLRCCTSSGSSIEDLNSPSTRIFIKGLPQSTSEGCLVTEFSRFGKVNGVKIITGRKSRQSLGLAYVWFTSEESAQLAAKEMDGKVYCCYICKA* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00862 149 SMART rrm1_1 77 147 IPR000504 GO:0003723
Eupl12g00862 149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 142 IPR000504 GO:0003723
Eupl12g00862 149 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 36 141 - -
Eupl12g00862 149 Gene3D - 38 146 IPR012677 -
Eupl12g00862 149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 149 IPR000504 GO:0003723
Eupl12g00862 149 SUPERFAMILY RNA-binding domain, RBD 61 143 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00862 74 139 Eukaryotic Initiation Factors Gene Family AT1G22760 40.000 9.11e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00862 - - nnu:104612647 144.05