Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00853 ATGGGGATCTCATTTAGTAGTAGAAGAAACAATAATTTCCTTCAAAACCCAACTCCCTCTCAACTCATCTCTTCTTATACTTCAAACCCATCTCATGTTCCTCCTCCTCCTCTGCCTCCACCACCACCAAATTATGTTTTCGCAGCGAACGCTCCTTATCCTTCACCCTCATACCCACCACAGAATCCTTATCCTCCTCCTCCTCATCCTCCTCACCCTTCTTACTATCAGTATTCCGGAGGCTATAGCCCCAGTGGATACGTCGGACCGATGATGGGTCGGTCGAATTACCACCCTTATTACGCCAATCCGAGTAATGGGTGGCCCGGAATTCGGCCTTTTGTGGTCCAGCCACAGCCACCACCGCCGCCTTACGTGGATCATCAGATGGCGAAGAAGATCAGGAACGATGTGAACGTGCACAAGGACACGATAAGGATTGAAGCTGATGAGAAGAACCCGGAATGCCGTTTGGTTTCTTTTACTTTGGATGCCTTGGTTGATGGGAGTATCACTATTTTTTACTTTGCCAAGGAAGGGGAGAACTGTAGGTTCACTCCACTATATCCTGAAGTCCATATGCCAGTGAGAATCCCCTTCCAGAGAGGACGGGGCCAGAAATTCTGTCAGCCTTCAGGAACTGGCATTGACCTAGGATTCTTTGAGTTGGACGATCTCTCAAAACCATCACCAAGGGAAGATATATTCCCAGTGGTGATCTTTGCTGAAGCATGCTCGTCAACTCTCCTGTCAGATGAGCAGCTTGGTCAGCCTCTGCCCACTACATCTCATGCACAGATTACTCAAGCCGTCCTAGAGAAGAACAATGGGAGCCCTTTCCAAGTTAAAGTAATCAAGCAAATATTGTGGGTTGATGGGGTTCGTTATGAGCTGCGTGAAATTTATGGAATCGGCAACTCAGCAGGAGCAGGCTTCAACGACAATGAACCAGGGAAAGAATGCGTTATTTGCATGTCTGAACCGAAGGACACAGCTGTGTTGCCTTGTCGGCATATGTGTATGTGCAGTGAGTGTGCAAAAGCATTGAGGCTTCAGACAAATAAGTGCCCAATATGTCGCCAGCCCATTGAGGAACTTATAGAGATCAAGGTGAATAAGGGTGATCAATGA 1131 0.4757 MGISFSSRRNNNFLQNPTPSQLISSYTSNPSHVPPPPLPPPPPNYVFAANAPYPSPSYPPQNPYPPPPHPPHPSYYQYSGGYSPSGYVGPMMGRSNYHPYYANPSNGWPGIRPFVVQPQPPPPPYVDHQMAKKIRNDVNVHKDTIRIEADEKNPECRLVSFTLDALVDGSITIFYFAKEGENCRFTPLYPEVHMPVRIPFQRGRGQKFCQPSGTGIDLGFFELDDLSKPSPREDIFPVVIFAEACSSTLLSDEQLGQPLPTTSHAQITQAVLEKNNGSPFQVKVIKQILWVDGVRYELREIYGIGNSAGAGFNDNEPGKECVICMSEPKDTAVLPCRHMCMCSECAKALRLQTNKCPICRQPIEELIEIKVNKGDQ* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00853 376 SUPERFAMILY RING/U-box 320 366 - -
Eupl12g00853 376 SMART ring_2 321 359 IPR001841 -
Eupl12g00853 376 CDD mRING-HC-C3HC5_MGRN1-like 319 360 IPR045195 -
Eupl12g00853 376 MobiDBLite consensus disorder prediction 30 74 - -
Eupl12g00853 376 MobiDBLite consensus disorder prediction 1 29 - -
Eupl12g00853 376 MobiDBLite consensus disorder prediction 1 76 - -
Eupl12g00853 376 FunFam probable E3 ubiquitin-protein ligase LOG2 305 370 - -
Eupl12g00853 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 370 IPR013083 -
Eupl12g00853 376 ProSiteProfiles Zinc finger RING-type profile. 321 360 IPR001841 -
Eupl12g00853 376 PANTHER MAHOGUNIN 58 371 IPR045194 GO:0061630
Eupl12g00853 376 Pfam Zinc finger, C3HC4 type (RING finger) 319 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00853 Eupl-Chr12 24371258 24381030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00853 71 376 C3H Transcription Factor Family AT3G06140 51.863 9.27e-104 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00853 - - nnu:104596432 466.848