Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00841 ATGGATCAGCAAGGGCATGGACAGCCCCCGGTCATGGGGGTGGTAGGCAGTGCTGCTCAAATGCCGTATGGTGCAACTCCGTATCAAGGTAACCAAATGATTGGGGGCACTCCCCCTGGTTCAGCAGGAGCTATTCAGTCTCCTGGTCAGTCAGCAGGTTTCACTGCATCCCCAGCTCAGCTTGCACAACACCAACTTGCTTATCAGCACATCCACATGCAGCAGCAACAACAACTCCAGCAACAACTCCAGAGTTTTTGGGCGAACCAGTACCAAGAAATCGAGCAGACAACTGACTTCAAGAACCATAGCCTGCCTCTGGCAAGGATCAAGAAGATCATGAAGGCAGATGAAGATGTAAGGATGATCTCCGCAGAGGCTCCAGTCATTTTTGCCAGGGCCTGTGAGATGTTCATCTTGGAGTTGACACTCCGTTCCTGGAACCACACAGAAGAGAACAAACGGAGGACACTCCAAAAGAACGACATTGCAGCAGCAATCACAAGGACTGATATTTTTGACTTCCTGGTTGACATTGTGCCAAGGGAGGATCTGAAAGATGAGGTACTTGCATCAATCCCAAGAGGAGGAGCCATGCCAGTTGGAGGTCCAGCTGATCCACTTCCTTACTATTATATGCCACCTCAGCATTCACCACAGGTTGGTACTCCAGGGATGATCATGGGTAAACCGGTGGTGGATCAAGCTTTGTATGCCCAACAGCCTCGGCCTTACATGGCTCAGCAGATGTGGCCACAGCCTCCGCAACAGCAGCAGCAACCGCCGTCAGATTCTTGA 798 0.5125 MDQQGHGQPPVMGVVGSAAQMPYGATPYQGNQMIGGTPPGSAGAIQSPGQSAGFTASPAQLAQHQLAYQHIHMQQQQQLQQQLQSFWANQYQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGGAMPVGGPADPLPYYYMPPQHSPQVGTPGMIMGKPVVDQALYAQQPRPYMAQQMWPQPPQQQQQPPSDS* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00841 265 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 63 230 - -
Eupl12g00841 265 Pfam Core histone H2A/H2B/H3/H4 63 167 IPR007125 GO:0003677
Eupl12g00841 265 FunFam Nuclear transcription factor Y subunit gamma 69 182 - -
Eupl12g00841 265 MobiDBLite consensus disorder prediction 243 265 - -
Eupl12g00841 265 SUPERFAMILY Histone-fold 72 176 IPR009072 GO:0046982
Eupl12g00841 265 Gene3D Histone, subunit A 66 182 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00841 Eupl-Chr12 24247957 24260987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00841 1 251 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.302 6.46e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Eupl12g00841 CBFD_NFYB_HMF 6e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00841 K08066 - nnu:104612503 434.491