Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00836 ATGGCTGCCCCGCCGAGTAATCGGCTCCAACATATGTTGCAGTCGGCAGTTCAAGCTGTTCAATGGACTTACAGTCTCTTCTGGCAAATCTGTCCACAACAAGGGATCTTAGTGTGGGGAGATGGGTATTACAATGGAGCTATAAAGACAAGGAAGACGGTGCAACCGATGGAGGTGACATCGGAGGAGGCGTCGCTGCAAAGGAGCCAACAGCTTAGAGAGCTTTATGAATCACTGTTAACGGATGATGTAAACCAGCCGGCTCGTCGGCCTTGTGCTTCGTTATCGCCGGAGGATTTGACAGAGTCGGAGTGGTTCTACCTTATGTGTGTCTCCTTCTCTTTTCCACATGGGGTGGGATTACCAGGAAAGGCATTTGCAAGGCGGCAGCATGTGTGGCTTACCAGTGCAAATGAAGCCGATAGCAAAGTCTTCTCTAGGGCCATTCTTGCCAAGAGTGCTCGGATACAGACAGTTGTATGCATTCCTCTCATGGGCGGCGTCGTTGAATTCGGCACAACAGAAAAGATTAAAGAAGACCTTAAAATGATACAACATGTCAAGAGCTTCTTCATTGACGGCCACCAACACCATCCAAAACCGGCACTCTCCGAGCAATCGACCTCCAACCCAGTGGTCTCATCAGAGCATTCCCGCTTCCACTCTCCATCCCTCCCTGTAATGTACTTGGCGGCAGACCCACCAGCCAATACCAATCGAGAAGATGAAGAAGAAGATGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCCGACTTCGAAGCTGAAACGGGACCGAATAGTGACCCGATTGTCGCACAAGAGCCTCTCCAGTTGTGTGACCCGATCATTAGTAATGTAGCTATGGTTCATGCTGCAACTGAGCCAAGCGAGCTGATGCAACTTGAGATGTCTGAAGACATTCGGGTCGGGTCGCCGGATGATGGCTCAAATAACTTGGAGTCCAACCTTCAAATGCTCGCCGTAAGCCAATCAGATGATCGAGCTGATCATCAGCTTCAGGCCGACTCGCATCGAGCCAAGTTAGCTTCTAGGTGGCCACTATTGCAGGAGCAATTCAAAACCGGTCTTCAATCACCACCTTCAGGAGCCCCTGAAATGGAGGAATTGAAACAGGAGGACACCCACTACTCCCAAACAGTCTCGAATATTCTTCAACAAAATTCCAACCGCTGGTCAGAATCTTCATCGGTCGGCTATGTCGGATACTCCCCGCAATCGGCATTCGCTAAGTGGAATTGCCGGAAAGATCAACTCTTCCACCTACCGTTGGATGGTACGTCACAATGGTTCCTCAAGTACGTTCTCATTCACGTACCCTTCTTACACGCCAAGTACCGAGACGAAAACTCTCCGATATCTCGCGACGCCGACACGGCAACACGATTCCGCAAGGCCACCCCACAAGACGAGCTGAGTGCGAACCATGTCCTAGCCGAGCGGCGACGACGAGAGAAGCTCAACGAGCGGTTCATCATCTTACGTTCACTAGTCCCGTTTGTCACCAAGATGGACAAGGCATCAATTCTCGGTGACACGATCGAGTACGTTAAACAGCTTAGGAGAAAGATACAGGACCTCGAGACACGTAATAGACAGATGGAGGGTGGTGATCAAAGATCAAGAAGTGGGGACAGTCAGAAGCAGAGAAGTGTGCATGGGAACAGCGGTGGTACGTTGCAGGATCGGGTACGGGTACTTACCGGGTCCGATAAGAGGAAGATGAGGATAGTAGAAGCGAGTGGTGGTGCAAAGGCTAAGGTGGTTGATGCCCCAAGCAACATGGAGGTGTCGATCATCGAGTGCAATGCATTGCTGGAGTTGCAGTGCTCGTACAGGGAAGGGCTCCTGCTCGAGATCATGCAGACACTTCGAGAGCTACGCTTGGAGACCACCGCCGTTCAGTCTACATCTAACAACGGGATCTTTGTCGCGGAGTTGCGGGCTAAGGTACAACCGTACACCTGGCACCATCCAAGTCTTTCTGTGGCTATAAAAACTTTCCTCTCCACTGAAAACATTTTCAACGACAAAAAAAAACCCTTTCTTTGGAATTATTCCGAAAATGGAAATTCTCACATGCACAAGAACACAAAAAGTTATCAAACTATAGTACAGACCACACTGACCATGTTTGGCCCATTCCCTGATTAG 2175 0.4966 MAAPPSNRLQHMLQSAVQAVQWTYSLFWQICPQQGILVWGDGYYNGAIKTRKTVQPMEVTSEEASLQRSQQLRELYESLLTDDVNQPARRPCASLSPEDLTESEWFYLMCVSFSFPHGVGLPGKAFARRQHVWLTSANEADSKVFSRAILAKSARIQTVVCIPLMGGVVEFGTTEKIKEDLKMIQHVKSFFIDGHQHHPKPALSEQSTSNPVVSSEHSRFHSPSLPVMYLAADPPANTNREDEEEDDEEEEEEEEEESDFEAETGPNSDPIVAQEPLQLCDPIISNVAMVHAATEPSELMQLEMSEDIRVGSPDDGSNNLESNLQMLAVSQSDDRADHQLQADSHRAKLASRWPLLQEQFKTGLQSPPSGAPEMEELKQEDTHYSQTVSNILQQNSNRWSESSSVGYVGYSPQSAFAKWNCRKDQLFHLPLDGTSQWFLKYVLIHVPFLHAKYRDENSPISRDADTATRFRKATPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQDLETRNRQMEGGDQRSRSGDSQKQRSVHGNSGGTLQDRVRVLTGSDKRKMRIVEASGGAKAKVVDAPSNMEVSIIECNALLELQCSYREGLLLEIMQTLRELRLETTAVQSTSNNGIFVAELRAKVQPYTWHHPSLSVAIKTFLSTENIFNDKKKPFLWNYSENGNSHMHKNTKSYQTIVQTTLTMFGPFPD* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00836 724 Coils Coil 237 259 - -
Eupl12g00836 724 MobiDBLite consensus disorder prediction 534 554 - -
Eupl12g00836 724 MobiDBLite consensus disorder prediction 239 263 - -
Eupl12g00836 724 Gene3D - 478 549 IPR036638 GO:0046983
Eupl12g00836 724 MobiDBLite consensus disorder prediction 534 571 - -
Eupl12g00836 724 Coils Coil 517 544 - -
Eupl12g00836 724 Pfam Helix-loop-helix DNA-binding domain 481 528 IPR011598 GO:0046983
Eupl12g00836 724 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 478 527 IPR011598 GO:0046983
Eupl12g00836 724 PANTHER TRANSCRIPTION FACTOR TT8 3 658 - -
Eupl12g00836 724 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 480 543 IPR036638 GO:0046983
Eupl12g00836 724 SMART finulus 484 533 IPR011598 GO:0046983
Eupl12g00836 724 MobiDBLite consensus disorder prediction 195 272 - -
Eupl12g00836 724 MobiDBLite consensus disorder prediction 201 221 - -
Eupl12g00836 724 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Eupl12g00836 724 MobiDBLite consensus disorder prediction 555 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00836 Eupl-Chr12 24167628 24173357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00836 5 657 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 33.036 3.55e-95 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl12g00836 bHLH-MYC_N 3.6e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00836 - - nnu:104596450 909.442