Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00819 ATGGTGGTGGCTCAGCTGGAGAACCAAGCTCGTCCCTCCTTCGATGACCACGACCACGACCACATACAGAAGACCAAGACCTTGATCTGTGCCCTCAATCTCATCTCTCGTAACCTCCCTCTCCCTCCTGACATCTTCGACTCCGTCTCCGCCATCTACTATTCTGAAGATGTAGGTAATGGGGACGACGGTGATGGTGGCGTTCGCGAGAACTACGATGACCACAATCGCCGACCCTCCGAGGAGGATTTGAGTGGTCCTGGGATTTTGGATAGAGGAGATTTAGTAACAGACCTTGAGGATGCACTGTTGAAGCAAAGGCCAAACTGCATGTCTGGTTTGGGATTGAGAGAATCAAGGGAAAATCGTTTACAGAGCCACATTCAGCATCGTTTAACTGAGCTTGAAGAGTTGCCTTCAAGTAGAGGTGAGGACCTGCAGGTGAAATGCTTGCTTGAGCTATATGGGCTAAAGCTAGCAGAGTTGCAAAGCAAGGTTCGGTCTAACGTGAGCTCAGAGTACTGGCTGCATGAGAAATGTGCATGTCCTGACAAGCAATTGTTCGACTGGGGAATGATGCGATTGCGTCGTCCCTATATCCTGTATGGTATTGGAGATGCTTTTGCCATGGAAGCGGATGATTGCCAGCGGAAGAAACGGGATGCGGAGAGGCTGTCGAGGTTAGAAGAGGAGGAAAAGAATCGCACGGAAACCAGAAAAAGGAAATTTTTTGCCGAAATTCTTAATGCAGCTCGAGAATTTCAATTGCAAGGACAAGCTGCTCTGAAACGCCGGAAACAAAGGAATGATGGGGTCCAGGCATGGCATGCAAGGCAAAGACAACGAGCTACACGGGCAGAGAAATTGAGGTTCCAAGCACTGAAAGCTGATGATCAAGAAGCGTACATGCGGATGGTGGAGGAGAGCAAGAATGAACGGTTAACTTTGCTTCTTGGAAAAACTAATGATCTTCTTGTTCGTTTGGGAGCTGCTGTTCAAAGGCAAAAAGACGCAGAACATTCCGATGGGGTTGAAGCTTTGAAAGCCTTAGAAGCTGATGACCCATCACAGTTGTCTGTTTCTAATAATGAAAGCCCGGCAAATTTGCTTCCTGAAGAAGATGCAGGCATGATTGATTTAGATACTAATCACCATGTTAAGACTAATGATCTACTTGAAGGACAGCGCCAGTATAATTCCACTATTCATTCAATTCAGGAAAAGGTAACAGAACAGCCAGCCATGCTTCAAAGTGGAGAACTAAGACCTTACCAGTTGGAAGGACTTCAGTGGATGCTCTCTTTGTTTAACAACAATCTAAATGGCATTTTAGCTGATGAGATGGGGTTAGGGAAGACAATTCAAACCATATCCCTGGTTGCATATCTCATGGAGAACAAGGGCGTAACTGGGCCGCACTTGATTGTGGCTCCAAAGGCTGTACTACCAAATTGGATGACAGAATTCTCAACCTGGGCTCCTAGTATTGTGGCCATTCTATATGATGGGCGTCTCGATGAAAGAAAGGCAATGAGGGAAGAGTATTCAGGGGAGGGAAAATTCAATGTGATGATCACCCACTATGATCTTATTATGCGAGACAAAGCATTTCTGAAGAAAATTCACTGGTACTACATGATTGTTGATGAAGGACATCGGTTAAAAAATCATGAGTGTGCTCTTGCACGGACTCTTGTGTCAGGCTATCGCATTAGACGTAGACTTCTGTTAACTGGTACTCCGATACAAAATAGTCTACAGGAGTTGTGGGCCCTGCTTAATTTTCTCCTCCCCAGCATTTTTAATTCAGTGCAGAATTTCGAGGAATGGTTTAATGCACCCTTTGCGGATCGATGCGATGTTTCACTTACAGATGAAGAAGAGCTATTGATTATTCGCCGTTTGCATCATGTTATAAGGCCATTCATACTAAGGAGGAAGAAAGATGAGGTGGAGAAGTACCTTCCTGGGAAAACCCAGGTCATACTGAAATGTGATCTTTCGGCATGGCAGAAAGTTTATTATCAGCAGGTCACTGACTTGGGGAGGGTTGGGCTGGATTCCGGATCTGGGAAGTCCAAAAGTCTTCAGAACCTGACGATGCAACTCAGAAAGTGTTGTAACCATCCATATTTATTCGTGGGAGAATATAACATATGGCGGAAGGAGGAGATTGTCAGAGCATCAGGGAAATTCGAGCTGCTTGATCGCTTACTCCCAAAACTCCATAGAGCAGGACATAGAGTCTTGCTTTTCTCACAAATGACCCGTCTCATAGACATTCTCGAAATTTATCTGCAACTACATGATTTTAAGTATCTCAGACTGGATGGTTCAACTAAGACAGAAGACAGAGGATCTCTACTAAAGCAGTTCAATGCACCAGATTCTCCAATCTTCATGTTTCTTTTGAGCACCCGAGCTGGAGGCCTTGGTCTAAACTTACAAACCGCAGATACTGTGATAATCTTTGACAGTGATTGGAACCCCCAAATGGACCAACAGGCAGAGGACCGGGCCCATCGTATTGGACAACGGAAGGAAGTGCGGGTATTTGTGTTGGTTAGTGTTGGATCAATTGAAGAGGTAATCTTGGAACGTGCAAAACAGAAAAGGGGCATTGATGCCAAGGTCATCCAGGCTGGATTATTCAATACAACTTCCACAGCTCAGGACAGAAGAGAGATGTTGCAAGAGATCATGCGGAGAGGTACAAGCTCGCTTGGGATGGACGTTCCAAGCGAGAGAGAGATCAACCGCCTTGCAGCCCGATCAGACGAGGAGTTCTGGATGTTTGAGGAGATGGATGAGGAGAGACGACAGAGGGAGAACTACAGATCAAGGCTGATGGAGGAACATGAGGTACCTGACTGGGCTTATTCCGTCCCCAAGGGAGAGAAGCATAAAGATCAAGAACCAGAGAGTGGCAACATCACAGGAAAGCGACGGAGAAAAGAGGTGGTATATGCTGACACACTGAGCGACGTACAATGGATGAAGGCTGTGGAGAATGGAGAAGACTTGTCAATGCTTACAGCTAAAGGCAAGAGAGAATATCTTCTGGCTGATGCCAATGAATCAACCAGTCATAATGTGGAGGGAGAACAAAAAGTATCAGAATTGAGGAATGACAATGTATCTATGACGAGTGAGGTAGCAACTGAAGCTTCCACCCCGAAAAGGGTCAAGTCTGGACCATTGCAGTCTGGCAAACCCGAATATGAAGGTGTTGGAGGAAGTGCTTTGACTGGAGACATCCTTACGTGGAAGACCCACAAGAGGAAGCGATCGAGCCATGGTGTCCCGAGTTCATCATCTGATGCAAGAAGGCAGACTTCTAACAGCTGA 3348 0.46 MVVAQLENQARPSFDDHDHDHIQKTKTLICALNLISRNLPLPPDIFDSVSAIYYSEDVGNGDDGDGGVRENYDDHNRRPSEEDLSGPGILDRGDLVTDLEDALLKQRPNCMSGLGLRESRENRLQSHIQHRLTELEELPSSRGEDLQVKCLLELYGLKLAELQSKVRSNVSSEYWLHEKCACPDKQLFDWGMMRLRRPYILYGIGDAFAMEADDCQRKKRDAERLSRLEEEEKNRTETRKRKFFAEILNAAREFQLQGQAALKRRKQRNDGVQAWHARQRQRATRAEKLRFQALKADDQEAYMRMVEESKNERLTLLLGKTNDLLVRLGAAVQRQKDAEHSDGVEALKALEADDPSQLSVSNNESPANLLPEEDAGMIDLDTNHHVKTNDLLEGQRQYNSTIHSIQEKVTEQPAMLQSGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLVAYLMENKGVTGPHLIVAPKAVLPNWMTEFSTWAPSIVAILYDGRLDERKAMREEYSGEGKFNVMITHYDLIMRDKAFLKKIHWYYMIVDEGHRLKNHECALARTLVSGYRIRRRLLLTGTPIQNSLQELWALLNFLLPSIFNSVQNFEEWFNAPFADRCDVSLTDEEELLIIRRLHHVIRPFILRRKKDEVEKYLPGKTQVILKCDLSAWQKVYYQQVTDLGRVGLDSGSGKSKSLQNLTMQLRKCCNHPYLFVGEYNIWRKEEIVRASGKFELLDRLLPKLHRAGHRVLLFSQMTRLIDILEIYLQLHDFKYLRLDGSTKTEDRGSLLKQFNAPDSPIFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQRKEVRVFVLVSVGSIEEVILERAKQKRGIDAKVIQAGLFNTTSTAQDRREMLQEIMRRGTSSLGMDVPSEREINRLAARSDEEFWMFEEMDEERRQRENYRSRLMEEHEVPDWAYSVPKGEKHKDQEPESGNITGKRRRKEVVYADTLSDVQWMKAVENGEDLSMLTAKGKREYLLADANESTSHNVEGEQKVSELRNDNVSMTSEVATEASTPKRVKSGPLQSGKPEYEGVGGSALTGDILTWKTHKRKRSSHGVPSSSSDARRQTSNS* 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00819 1115 Gene3D - 387 645 IPR038718 -
Eupl12g00819 1115 MobiDBLite consensus disorder prediction 1027 1115 - -
Eupl12g00819 1115 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 433 599 IPR014001 -
Eupl12g00819 1115 PANTHER SNF2/RAD54 HELICASE FAMILY 213 1028 - -
Eupl12g00819 1115 FunFam Probable ATP-dependent DNA helicase CHR12 652 950 - -
Eupl12g00819 1115 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 648 899 IPR027417 -
Eupl12g00819 1115 FunFam Chromatin structure-remodeling complex protein SYD 412 655 - -
Eupl12g00819 1115 CDD SF2_C_SNF 722 855 - -
Eupl12g00819 1115 Coils Coil 935 955 - -
Eupl12g00819 1115 SMART helicmild6 760 844 IPR001650 -
Eupl12g00819 1115 MobiDBLite consensus disorder prediction 57 90 - -
Eupl12g00819 1115 MobiDBLite consensus disorder prediction 1101 1115 - -
Eupl12g00819 1115 Pfam SNF2-related domain 424 712 IPR000330 GO:0005524|GO:0140658
Eupl12g00819 1115 Gene3D - 652 951 IPR027417 -
Eupl12g00819 1115 MobiDBLite consensus disorder prediction 62 90 - -
Eupl12g00819 1115 Pfam Helicase conserved C-terminal domain 731 844 IPR001650 -
Eupl12g00819 1115 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 734 901 IPR001650 -
Eupl12g00819 1115 SMART SnAC_2 937 999 IPR029295 GO:0042393
Eupl12g00819 1115 Pfam Snf2-ATP coupling, chromatin remodelling complex 934 999 IPR029295 GO:0042393
Eupl12g00819 1115 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 646 IPR027417 -
Eupl12g00819 1115 Coils Coil 212 239 - -
Eupl12g00819 1115 MobiDBLite consensus disorder prediction 1041 1064 - -
Eupl12g00819 1115 SMART ultradead3 417 610 IPR014001 -
Eupl12g00819 1115 MobiDBLite consensus disorder prediction 963 982 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00819 Eupl-Chr12 23971397 23993882 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00819 727 902 RAD5 or RAD16-like Gene Family AT5G43530 33.708 8.96e-21 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl12g00819 SNF2_N 5.8e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00819 - - nnu:104596478 1794.25