Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00814 ATGGCGGCACCAACCGAGTCTGTTCAGTGCTTCGGGCGGAAGAAAACCGCCGTGGCCGTCACCCACTGCAAGCGCGGGCGTGGTCTAATCAAGATCAACGGCTCTCCAATTGAGCTGGTGCAGCCGGAGATCCTCCGCTACAAGGCCTATGAGCCGATCCTCCTGCTCGGACGGCATCGATTCGCCGGCGTTGATATGAGGATCAGAGTGAGAGGTGGAGGCAACACTTCTCAGATCTACGCCATCCGTCAGAGCATCGCGAAGGCGTTGGTTGCGTACTACCAGAAGTACGTGGACGAGCAGTCGAAGAAGGAGATCAAGGACATCCTCATCAGGTACGATCGGACGCTTCTCGTTGCAGATCCGAGGCGGTGCGAGCCCAAGAAGTTCGGTGGTCGCGGTGCCCGTGCAAGTGCGGCACCACCCAGCAGCGCACTTCGTGTCTTTCTCACAATCTTCACTTCCTGGCACACTCTTAGGTGGACCTACAAATCTGATGGGTTGGTGTTGCTCTTAGGGGGTTTCTCGCCGCTCCACCACCGTGTCTCCGGTTCAATGCACCAGTGGTTTACCTACTCCTGTCTTTCTTCTGTGCTCCAGCTATCAACAAATGTCATTCTATACACACTAGACTCTATCATTCTCCTCTCTGTAAACCCAAATCCACTACCAACCCAACCACCAAGCTTGACCAGTCCTCCAGCTTTCCTACATCCCCTCTCCACCTTAGATTTGGAATACAAAATGAAGATGAGATGTCGTGAAGGACCCATTGTACGTCCAAGGCCGGAGGTGGAACACCAGGGACTTAAAGAATGGAAAAATGCGGTCATAGGCAAGCTTCTAGCGGACAAGTTAATTCCCCCTTCAAAAGTACATCAAAGTGTTTTACTTTCTTGGGGACAAACACGATGTTTCACTTTCGTCGATCTGGGAGGGAATGTCTTTGGTTTTCTCTTTGCAACTGAGCGTGACCAACTATGGGTTTTGGAAGAAGGACCTTGGACAGTGCATGCAAATCTGCTGGTCCTCCAAAAAAGAGTTGCACTAGTCTATCCTGCTAATATGGTTTTTTGGTCTTGCCCTTTTTGGATCCAAGCCCATGGGGTTCCTGTTGAATTATTTAGCCCCATAACAGCTAAAGATCTTGCCAAGCAAGTTGGAGAAATTCTGAAAGAAGTTAGCACGGATGAAAATTTCAAGCGGTGCAAATTCATTCATTTTAGAGCCACGGTGGATCTTCGCAAAGGCCTCATGCCAGGTGTATGGTTTCCTTTTGAAGGATTCTGGTATTGA 1296 0.5008 MAAPTESVQCFGRKKTAVAVTHCKRGRGLIKINGSPIELVQPEILRYKAYEPILLLGRHRFAGVDMRIRVRGGGNTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILIRYDRTLLVADPRRCEPKKFGGRGARASAAPPSSALRVFLTIFTSWHTLRWTYKSDGLVLLLGGFSPLHHRVSGSMHQWFTYSCLSSVLQLSTNVILYTLDSIILLSVNPNPLPTQPPSLTSPPAFLHPLSTLDLEYKMKMRCREGPIVRPRPEVEHQGLKEWKNAVIGKLLADKLIPPSKVHQSVLLSWGQTRCFTFVDLGGNVFGFLFATERDQLWVLEEGPWTVHANLLVLQKRVALVYPANMVFWSCPFWIQAHGVPVELFSPITAKDLAKQVGEILKEVSTDENFKRCKFIHFRATVDLRKGLMPGVWFPFEGFWY* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00814 431 ProSitePatterns Ribosomal protein S9 signature. 72 90 IPR020574 GO:0003735|GO:0005840|GO:0006412
Eupl12g00814 431 Gene3D - 1 141 IPR014721 -
Eupl12g00814 431 SUPERFAMILY Ribosomal protein S5 domain 2-like 7 138 IPR020568 -
Eupl12g00814 431 PANTHER RIBOSOMAL PROTEIN S9 6 138 IPR000754 GO:0003735|GO:0005840|GO:0006412
Eupl12g00814 431 Pfam Ribosomal protein S9/S16 12 138 IPR000754 GO:0003735|GO:0005840|GO:0006412
Eupl12g00814 431 FunFam 40S ribosomal protein S16 1 141 - -
Eupl12g00814 431 Pfam Domain of unknown function (DUF4283) 270 407 IPR025558 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00814 Eupl-Chr12 23915511 23919552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00814 5 137 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 89.474 7.14e-84 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00814 K02960 - sind:105170522 250.751