Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00812 ATGGAGCAGCAGAGGCGCCAAGACCAACTAACCCTCCCAGAAAGGAAAGGGCAAAAGCGAAAGCTGGAAGAAGAAATCGAAGAAGATCGAGATCTCTCTCTCAAATCTCCTGAAGCTCACCGCGCCCTATTGTGCGAGGTGAGTGCGCAGGTTAATATCCTTAACAACAGCTTCTCTTGGAAAGAGTCGGATCAAGCTGCCGCCAAGCGCGCTACTCACGTTCTCGCCGAACTCGCCAAGAACGAAGAAGTTGTGAATGTTATCGTCGATGGCGGTGCGGTCCCGGCTTTGGTGAGGCATCTTCAGGCGCCCCCTACATCGAGAGAAGGCGACAATGTTCAGAAGCCGTTCGAGCATGAAGTCGAGAAAGGGAGCGCTTTTGCTCTCGGGCTTCTTGCTGTTAAGCCAGAGCATCAACAACTCATAGTTGACGCTGGCGCTTTGTCTCATCTTGTGGACCTGCTAAAGAGGCATAGGGATAGTTCCAACTCTCGGGCAGTCAATAGCGTTATTCGGAGAGCGGCTGACGCAATCACCAACCTCGCTCATGAGAATAGCAGTATTAAAACCCGTGTCAGGATCGAAGGGGGGATTCCGCCTCTCGTTGAGTTGCTTGAGTTCACTGATACAAAGGTACAGAGAGCAGCTGCAGGGGCCCTGCGAACCCTGGCGTTTAAAAATGACGAAAACAAGAATCAGATTGTGGAGTGCAATGCTCTTCCTACTCTCATTCTAATGCTTCGATCTGATGATGCTGCTATACATTATGAGGCGGTTGGTGTGATTGGGAATCTGGTGCATTCATCCCCAAACATAAAGAAAGAAGTGCTCCTTGCTGGAGCTTTGCAACCGGTTATTGGATTACTCAGGTCTTGCTGTTCTGAGAGCCAAAGGGAGGCAGCTTTGTTACTTGGGCAATTTGCTGCGACGGATTCAGATTGCAAGGTGCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATCGAGATGCTTCAATCCCCAGATGTACAACTTAGGGAAATGTCAGCCTTTGCACTTGGGAGGTTGGCACAGGACACACACAACCAAGCTGGCATTGCCCATAATGGTGGTCTAATGCCATTGCTGAAGCTTCTTGATTCAAAAAATGGTTCTCTGCAACACAATGCTGCATTTGCTCTTTATGGTCTTGCAGACAATGAGGATAATGTCTCTGATTTTATCAAGGTGGGAGGTGTTCAGAAGTTGCAAGATGGAGAATTCATTGTTCAAGCAACCAAAGATTGTGTAGCCAAGACATTGAAAAGATTAGAGGAGAAGATCCATGGACGAGTATTGAACCATTTGTTATATCTGATGCGCGTAGCCGAGAAGGTTGTTCAGAAGCGGGTTGTTTTGGCCCTTGCTCATCTTTGTTCCCCCGACGATCAAAGAACAATATTCATTGATAACAATGGATTGGAGTTGCTTTTGGGGCTTCTTGGGTCCACAAACCCAAAGCAGCAGCAAGATGGTTCTGTTGCTCTGTACAAGTTGGCCAACAAAGCCACATTACTCTCTCCCATGGACGCAGCTCCTCCATCTCCGACACCACAGGTCTATTTGGGTGAGCAATACGTAAACAATCCTACACTGTCCGATGTTACCTTTTTAGTTGAAGGTAGACGATTCTATGCTCACAGAATCACTCTGCTTGCTTCTTCAGACACATTCCGTGCAATGTTTGATGGTGGTTACAGGGAGAAAGATGCAAGAGACATAGAGATTCCCAATATAAGATGGGAGGTTTTTGATATGATGATGAGATTCATATATACAGGGTCAGTGGATGTTACATTAGATATTGCGCAGGATCTCCTCAGAGCTGCAGATCAGTATCTCTTGGAGGGACTTAAGCGTTTGTGTGAGTATGCAATTGCACAGGATATATCCTTGGACAATGCTTCAAGCATGTATGAACTTTCAGAGGCGTTCCATGCTATGTCACTAAGGCACTCCTGCATCCTGTTTATTCTGGAGCAGTTCGAGAAATTGAGTGCTAAGCCAGGGTATTCTCAACTGATCCAACGTATAATACCAGAAATCCGTAACTACTTCTCCAGAGCACTTACTAAGCCTAACCAACGTAACTTCCGGCTATAG 2121 0.4686 MEQQRRQDQLTLPERKGQKRKLEEEIEEDRDLSLKSPEAHRALLCEVSAQVNILNNSFSWKESDQAAAKRATHVLAELAKNEEVVNVIVDGGAVPALVRHLQAPPTSREGDNVQKPFEHEVEKGSAFALGLLAVKPEHQQLIVDAGALSHLVDLLKRHRDSSNSRAVNSVIRRAADAITNLAHENSSIKTRVRIEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSDDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLRSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIKVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKVVQKRVVLALAHLCSPDDQRTIFIDNNGLELLLGLLGSTNPKQQQDGSVALYKLANKATLLSPMDAAPPSPTPQVYLGEQYVNNPTLSDVTFLVEGRRFYAHRITLLASSDTFRAMFDGGYREKDARDIEIPNIRWEVFDMMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYAIAQDISLDNASSMYELSEAFHAMSLRHSCILFILEQFEKLSAKPGYSQLIQRIIPEIRNYFSRALTKPNQRNFRL* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00812 706 SMART arm_5 227 267 IPR000225 GO:0005515
Eupl12g00812 706 SMART arm_5 352 392 IPR000225 GO:0005515
Eupl12g00812 706 SMART arm_5 185 225 IPR000225 GO:0005515
Eupl12g00812 706 SMART arm_5 311 351 IPR000225 GO:0005515
Eupl12g00812 706 SMART arm_5 467 507 IPR000225 GO:0005515
Eupl12g00812 706 SMART arm_5 81 134 IPR000225 GO:0005515
Eupl12g00812 706 SMART arm_5 135 183 IPR000225 GO:0005515
Eupl12g00812 706 SMART arm_5 269 309 IPR000225 GO:0005515
Eupl12g00812 706 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 701 IPR044282 -
Eupl12g00812 706 Gene3D - 208 416 IPR011989 -
Eupl12g00812 706 Gene3D Potassium Channel Kv1.1; Chain A 530 674 IPR011333 -
Eupl12g00812 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Eupl12g00812 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Eupl12g00812 706 SMART BTB_4 539 636 IPR000210 GO:0005515
Eupl12g00812 706 SUPERFAMILY POZ domain 530 633 IPR011333 -
Eupl12g00812 706 Pfam BTB/POZ domain 532 634 IPR000210 GO:0005515
Eupl12g00812 706 CDD BTB_POZ_ARIA_plant 526 640 - -
Eupl12g00812 706 Gene3D - 417 515 IPR011989 -
Eupl12g00812 706 ProSiteProfiles BTB domain profile. 539 606 IPR000210 GO:0005515
Eupl12g00812 706 MobiDBLite consensus disorder prediction 1 31 - -
Eupl12g00812 706 SUPERFAMILY ARM repeat 437 508 IPR016024 -
Eupl12g00812 706 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Eupl12g00812 706 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Eupl12g00812 706 Pfam Armadillo/beta-catenin-like repeat 136 182 IPR000225 GO:0005515
Eupl12g00812 706 Pfam Armadillo/beta-catenin-like repeat 192 224 IPR000225 GO:0005515
Eupl12g00812 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Eupl12g00812 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Eupl12g00812 706 Gene3D - 39 207 IPR011989 -
Eupl12g00812 706 SUPERFAMILY ARM repeat 54 411 IPR016024 -
Eupl12g00812 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 147 IPR000225 GO:0005515
Eupl12g00812 706 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00812 Eupl-Chr12 23891960 23906200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00812 295 409 U-box Gene Family AT3G46510 29.915 1.92e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Eupl12g00812 BTB 1.1e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00812 - - nnu:104596487 1244.18