Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00785 ATGGCGGACAGCAAGGCGGTGACAATCCGAACGAGGAAGTTCATGACCAACAGGCTTCTCTCGAGGAAGCAATTCGTCATTGATGTTCTCCATCCAGGAAGGCCGAATGTTTCGAAGGCGGAATTGAAGGAGAAATTGTCGAAGATGTATGAAGTGAAAGATCCGAATTCCATTTTCGTATTTAAGTTCCGGACCCACTTTGGTGGTGGAAAATCCACTGGGTTTGGGCTGATTTACGACTCTGTTGAGAACGCAAAGAAGTACGAGCCAAAATACAGGCTAATCAGGAATGGACTAGATACCAAGGTAGAGAAGTCAAGGAAGCAGATGAAGGAACGGAAGAATAGGGCCAAGAAAATCCGTGGAGTAAAGAAGACGAAGGCTGGAGATGCTGCCAAGGCAGGAAAGAAGAAATGA 417 0.4628 MADSKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLSKMYEVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKAGDAAKAGKKK* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00785 138 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 7 109 IPR012678 GO:0003735|GO:0005840|GO:0006412
Eupl12g00785 138 FunFam 40S ribosomal protein S24 1 138 - -
Eupl12g00785 138 ProSitePatterns Ribosomal protein S24e signature. 67 89 IPR018098 -
Eupl12g00785 138 MobiDBLite consensus disorder prediction 103 138 - -
Eupl12g00785 138 Pfam Ribosomal protein S24e 26 104 IPR001976 GO:0003735|GO:0005840|GO:0006412
Eupl12g00785 138 Hamap 30S ribosomal protein S24e [rps24e]. 5 107 IPR001976 GO:0003735|GO:0005840|GO:0006412
Eupl12g00785 138 Gene3D - 2 133 - -
Eupl12g00785 138 PANTHER 40S RIBOSOMAL PROTEIN S24 1 132 IPR001976 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00785 Eupl-Chr12 23461291 23466582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00785 1 133 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 87.218 2.78e-83 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00785 K02974 - cave:132163275 243.817