Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00784 ATGAAAGCGGGCGGGAGATCTGGTAATCCATCGGGGAGTATGGAGAAGGATAGGGCCCCTTTGGGCCGTTTAATTATTAGGAAAAAGGGGGATGGGACGAGCAGCGGGGGTCCTTCGGGGAAACAAAAGGTTTTTGAATCGAAGAAGGAGAAGAAGAGACCGCGGCTGATACTGAGTGATTCGGAGTCTGACAAGGACTTACTAATCTCTCCTCGCAGAATGGTTACAAGTCGCAATAGTAATGCCTCTGTTGTTGTTAAAAAGAACAGTCGAAATTCATTTAAACACAAAGAAGAGATTGAAATCAATAGGAAAAGAATTAGGTCAGAACCTGGTAAATGGGGGGAAGACGCCAAGAGCTGTAGGAGCAGTTTTGTGGAAGCTGGCATTGAAAGCAAGAGGAGTAGGTTGGATGTTTTTGAATACAACGAAGATGATGGAATTGATAGAAAAAGGATGAAGAAGGAGCGTCTGGATGATGATGGAGCTGGGATTGGAAGGAGTAAGGTTTTGGGTTCCAATTCCCTGGCACCAAGTGGAAATCAGAGGGAACTTGAAATTGAATGCAGCAGAAGCGTTTCGGTTGACAAGAGAAAGCATTCTAATTTTGGCAGGAACAGCAGCATGTTAGTTGAAAGAAACAGGGGAGCTGATCTTTCGGATAAGAAGAGGTTTGAGATTAAAAAAGATGCAAGTTTTCGTCCAGTTGGCACACTGCGAGAGAAGTTTGGGGTTCCTTGTGATGAACCTATCAGGGTGCAGGGTAAAAATGGTGTTTTGAAGGTGATGCTCAATAATAAGAACAGGGTTGGCGGGTCTGAGAAAACGTATGGTCGCCATGACGCAGAAGATAATAGAAAGGGTTCTATGTCTGCCAATACTTCCAACTGGAATGCACCGCTTCGTCCTCCATTTTTATCAGAAAAGAAGTTTTGTGAAAAACCATGCTCATTTGCAACAATGGAGAAGAATCAAGTGAAGTCGCGGAAAATTTCATCAAGTAAAAACATCAAAGCCCGTGATTGGAGAACAGAAGACAGTGATATGTCCTCGCCGCTGGGGTCAAAAAATGTGAGTACTTATAGTTTCAAGAAAGAGGTAAGGAACAAAGGAGAAAGAACTTTGACATCCAAACTTAGCTTGTCAACTAGACGCAAGAAAGGAGAAGTTAGGCGTGGTAGTGGCACTGAAAAGCAATTACTACGGGAACAGATAAGGGAGATGCTTGTGAATGCAGGCTGGACAATTGATTTTCGGCCTAGGAGGAACAGAAACTACCACGATGCGGTGTACATCAATCCTTCAGGAACAGAGCACTGGTCAATCCTCAAAGCTTATGATGCGCTTCAAAAGCAATGCGAAGATGAGGACAGTGACCATAAGCGTAGTGGGACCAGTTCTTCATTTACACCAATACCGGAAAAGGTCCTCAGTCAATTAACAAGGCAAACACGCAAGAAGATTGAGAGAGAAATGATGATGAAGCACAGAGCTGACAGAGGAAATAAAAACGCAAAGTCCACTGAAAAAAAGTCTGCAAAGAGTAAACATGTTAAAGAGAAATTGAATTCCCTCATCATGCGTGATGGCAAGTCACTGAAGGTGAGAATGAAGGAAAACAGTTTTGCCGGTCTAAACACGAAGAGCCTCACTAAAAGTCAGAAATCTACTCATCTTTCAAACAAAGCTGGTTCTGGAAATGGGGAATGTTTGCTTCACAAACAAAGTAGTTCAACTGGCACCTTGCACAAGGGAATGCCAAAGCCAGCTAGGGTTCAGAAGTCATTCTTTGCATCAGACGCTCGTTTGCTACAAAGAAGAAAACATAAAAAGCAAAGTGGATGTGCTTTGTTGGTTCGTAGCTCTAGCAAAGGGGTGAATCCGGACGATGGTGATTTTATTCCATACACTGGAAAACGAACTGTTCTCTCCTGGCTGATAGATTTGGGAATTGTGCCCCTGAGCGGGAAAGTGCAGTATATGAACAAGAGACGCACACGAGTAATGCTGGAGGGTTGGATTACAAGGGATGGCATTCATTGTGGTTGCTGTAGTAAAATCCTCACAATTTCGAAGTTCGAGATTCATGCAGGAAGCAAATTGCGTCAGCCGTTCCAAAATATATATCTAGAGACCGGGGTTTCCCTTTTCCAGTGCCAGCTAGACGCATGGAACGGACAAGAGGAATCTGAACGCAGTGAATTCCATTTCATAGACTTTGATGGTGATGACCCAAATGATGATACTTGTGGCATCTGTGGAGATGGCGGGGACTTGATTTGTTGCGATGGGTGTCCTTCAACGTTCCACCAAAGCTGCTTAGGTATACAGATGCTTCCTCTAGGTGATTGGCACTGTCCGAATTGTTCATGCAAATTTTGTGGGATAGCTGGTGCCAGTACTGATCAAGGGGAAAGTATAACTCTCTCTCCGTTACTCACATGCAGTCTGTGTGAGAAAAAGTATCACCAGTTATGTAGTCAGGCCACGGATGCTGTAAATTTTGATTCCAATAGCTTACACACTTACTTTTGTGGGCGGAGCTGTAGAGAGCTCTTCGAGCAATTGCAGAAGCTTCTCGGGGTTAAACATGAGCTGGAAGCGGGATTTTCATGGACTCTGGTTCAGCGTTCTGATTTAGACTCGGATACACATCTCCTTGGATTACCTCAAAAGGCAGAATGCAATTCCAAGCTAGCTGTTGCTCTGTCTGTTATGGATGAATGCTTTTTGCCCATTGTTGATCGGAGGAGTGGAATCAATTTGATTCACAATGTTGTATATAATTGTGGATCGAACTTTAATCGGCTGAATTATAGTGGCTTCTACACTTTTGTTTTGGAGAGGGGGGATGAACTTATCTCCGCAGCATCCATTAGGATCCATGGGACTAGGTTAGCAGAGATGCCATTCATCGGGACCCGCCATATTTATAGGCGTCAGGGAATGTGCCGGCGGCTTCTAAATGCAATTGAATCAGTTCTCTGCTCTCTCAATGTGGAGAAACTGATAATACCTGCTATTTCCGAACTCATGCACACATGGACTATAGTTTTTAATTTCAAGCTCCTTGAGGAATCACACAAGCACGAAATGAGGTCCATGAATATGTTAGTATTCCCTGGTACAGATCTGTTACAGAAGCTACTAGTGAAGCACAATTTGACTGAAGGAAATGTAGCCGATGGTTCAGTTGTGAAGGCCACTGAACTTAAAAGCAACCATCAGATTATGCCTGAGGTGATTAAGAAATCTGATATTGGTTCTTCTGCTGGGCCTGATGTCCATTCTTCTTATGAAGGTGTTGTCCCTCATGCATGTGAGGTGAATGATGAAGTTGCTGCAATCGAAACTGGTTCCCAACCTCCCGGTGGTTCGATATATGATACTTCTGACGTCATTGATGCTCATGAAGTTAATGTCAAAGTTGCTGGTGTTGAAATGGATGTCCATTCATCAGCTGAAACTTCTGTACAACAGACAACTAATACAATAGGCGAATATCCAAATGCTGTTTCTGGTTATAATTTTCAGGCTACTGATGGGAGTCCTGTTCAATGTAATACTGATTTGAATCATCAGAATATGCATGAGATGGAATGTAAATCGGTTGAGGCTTGTCATGTTGTGTCTGATGCAATTCATTGCAAAGAAACTATCCTTTGCGCATCCGATGAGGCTACGGGTCATGATGTTTGTGAGGTGAAAACTGAAGAAGTGGCTGATGAACCTGTCGTGTTTACTTCTGATGAGGGCTGTGTGCACCACTCTGCTGATATCATTACTCAAGTCCAGGATGCTGCTTTTGTGGTTGGTTTTCAAGGTTCTGGTGAGAATGTTGTATCTCATGATTCAGAGAGTATCAGTCAACCCCGGGGCACTGTATCTGAGTATAATTTTCACTTTTCTGCTGAAAGTGTAATTTATCATGATTTCAAGTTGCCGCAGAAGATCCAGGAATGTGCTCTTGATGCATCTGACACAGTGTGTAATACCCATGAAGTCAAAAATGAAGTTGCTGCTGTTGAATATAATCCTCAAGCTTTGGGCGAGGATTCTGTGGTCTGTACTTCTGAGGTGGTCAGTGAGCCTTTATATACTGCTTCCAAGTGTCATTATCTAGCATCTGCTGAGTGTAATAGTTTTGAGTCTCTATCCAATTGCTGTAACTCTTCGTCCGATATAGCTGTTCTCCCTGCTTACGAGGTAGTTCATCTCAGTACACACGATGTAGCAGATAACTGTTGTGTAGATATCACTGTTGACTCTGGCCTTAATGCTTCTGATCGGGGCAGCATGCTTGGCACTTGTGGAGTAGAAGTTGGAGTTGGTCCTAATCACCATACTTTTGGTCAAGCTTCTTTACATGATACCCTTGATTCTGTTCCTGAACCTAATTTCCTGGCTTCTGGTGGGAGTAATAGATTTTGTAATTCTGAGATGCTCCAGAAGAACCCAGATTTCACATCAGATCTTGTTCAAAATGTTTTTGCCTCTGCTGAGGGTAATGCTCATGATAATCATAGCCTAAAAGATGAAGTTCCTGGTGTTGAACCTATTGTACACGCCCTTGATGAGGATTCTATGCACAACACTTCCGAAATGATCATTAAATCGTTAGACACGACCCAGTCTGATTCTCAAGTTGCTCATTTGTGTCATCCAGTATAA 4671 0.4312 MKAGGRSGNPSGSMEKDRAPLGRLIIRKKGDGTSSGGPSGKQKVFESKKEKKRPRLILSDSESDKDLLISPRRMVTSRNSNASVVVKKNSRNSFKHKEEIEINRKRIRSEPGKWGEDAKSCRSSFVEAGIESKRSRLDVFEYNEDDGIDRKRMKKERLDDDGAGIGRSKVLGSNSLAPSGNQRELEIECSRSVSVDKRKHSNFGRNSSMLVERNRGADLSDKKRFEIKKDASFRPVGTLREKFGVPCDEPIRVQGKNGVLKVMLNNKNRVGGSEKTYGRHDAEDNRKGSMSANTSNWNAPLRPPFLSEKKFCEKPCSFATMEKNQVKSRKISSSKNIKARDWRTEDSDMSSPLGSKNVSTYSFKKEVRNKGERTLTSKLSLSTRRKKGEVRRGSGTEKQLLREQIREMLVNAGWTIDFRPRRNRNYHDAVYINPSGTEHWSILKAYDALQKQCEDEDSDHKRSGTSSSFTPIPEKVLSQLTRQTRKKIEREMMMKHRADRGNKNAKSTEKKSAKSKHVKEKLNSLIMRDGKSLKVRMKENSFAGLNTKSLTKSQKSTHLSNKAGSGNGECLLHKQSSSTGTLHKGMPKPARVQKSFFASDARLLQRRKHKKQSGCALLVRSSSKGVNPDDGDFIPYTGKRTVLSWLIDLGIVPLSGKVQYMNKRRTRVMLEGWITRDGIHCGCCSKILTISKFEIHAGSKLRQPFQNIYLETGVSLFQCQLDAWNGQEESERSEFHFIDFDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLGIQMLPLGDWHCPNCSCKFCGIAGASTDQGESITLSPLLTCSLCEKKYHQLCSQATDAVNFDSNSLHTYFCGRSCRELFEQLQKLLGVKHELEAGFSWTLVQRSDLDSDTHLLGLPQKAECNSKLAVALSVMDECFLPIVDRRSGINLIHNVVYNCGSNFNRLNYSGFYTFVLERGDELISAASIRIHGTRLAEMPFIGTRHIYRRQGMCRRLLNAIESVLCSLNVEKLIIPAISELMHTWTIVFNFKLLEESHKHEMRSMNMLVFPGTDLLQKLLVKHNLTEGNVADGSVVKATELKSNHQIMPEVIKKSDIGSSAGPDVHSSYEGVVPHACEVNDEVAAIETGSQPPGGSIYDTSDVIDAHEVNVKVAGVEMDVHSSAETSVQQTTNTIGEYPNAVSGYNFQATDGSPVQCNTDLNHQNMHEMECKSVEACHVVSDAIHCKETILCASDEATGHDVCEVKTEEVADEPVVFTSDEGCVHHSADIITQVQDAAFVVGFQGSGENVVSHDSESISQPRGTVSEYNFHFSAESVIYHDFKLPQKIQECALDASDTVCNTHEVKNEVAAVEYNPQALGEDSVVCTSEVVSEPLYTASKCHYLASAECNSFESLSNCCNSSSDIAVLPAYEVVHLSTHDVADNCCVDITVDSGLNASDRGSMLGTCGVEVGVGPNHHTFGQASLHDTLDSVPEPNFLASGGSNRFCNSEMLQKNPDFTSDLVQNVFASAEGNAHDNHSLKDEVPGVEPIVHALDEDSMHNTSEMIIKSLDTTQSDSQVAHLCHPV* 1557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00784 1556 ProSiteProfiles Zinc finger PHD-type profile. 747 792 IPR019787 -
Eupl12g00784 1556 MobiDBLite consensus disorder prediction 271 300 - -
Eupl12g00784 1556 CDD PHD2_CHD_II 750 789 - -
Eupl12g00784 1556 MobiDBLite consensus disorder prediction 1 64 - -
Eupl12g00784 1556 Pfam Tify domain binding domain 672 721 IPR032308 -
Eupl12g00784 1556 PANTHER PHD FINGER PROTEIN 12 380 1227 IPR042163 GO:0003714|GO:0045892
Eupl12g00784 1556 MobiDBLite consensus disorder prediction 273 287 - -
Eupl12g00784 1556 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 740 802 IPR013083 -
Eupl12g00784 1556 SMART PHD_3 791 850 IPR001965 -
Eupl12g00784 1556 SMART PHD_3 749 790 IPR001965 -
Eupl12g00784 1556 MobiDBLite consensus disorder prediction 43 64 - -
Eupl12g00784 1556 MobiDBLite consensus disorder prediction 374 396 - -
Eupl12g00784 1556 MobiDBLite consensus disorder prediction 160 179 - -
Eupl12g00784 1556 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 937 1009 IPR016181 -
Eupl12g00784 1556 MobiDBLite consensus disorder prediction 453 472 - -
Eupl12g00784 1556 Pfam PHD-finger 750 792 IPR019787 -
Eupl12g00784 1556 CDD NAT_SF 945 1005 - -
Eupl12g00784 1556 MobiDBLite consensus disorder prediction 495 519 - -
Eupl12g00784 1556 MobiDBLite consensus disorder prediction 382 396 - -
Eupl12g00784 1556 SUPERFAMILY FYVE/PHD zinc finger 740 795 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00784 Eupl-Chr12 23432764 23458643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00784 2 1060 PHD Transcription Factor Family AT4G14920 44.598 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl12g00784 TDBD 1.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00784 - - ming:122090543 1298.11