Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00781 ATGGATCCGCCTATGTGGTCTCTGCGGGACGTTATCGCCTATTTACCCAGTGGTCACATGGACCTTTACTTAATTTCATCAATTATGGAAAAAGTCCTATATATTCTCGTCGACCTACATGGGCAGGGGAAGTTTAACGGTAACCTACAACCAGGTAACATCTATATTGACTCCAAGGGTTTTGTAACCCTTGTTGAATTTGATTTCTTGTCTTCACTTAGTGAGTCAAATGCAACATTGGAGAGGTGCCGATCAATTCGGTGGAAGGCCCTCCGTACTGGTTTCCACTGGATGTCTCTGGTTGCGAACGAAGAATTCCAACACATTCTTCGTGTTCTGAACACGAACGTCGATGGGAAACAAAAGATCATGTTTGCCCTAACTTCCATTAAAGGTATCGGTCGCCGTTTCGCCAACATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAAAGAGCTGGTGAGCTCACTGCTGCTGAGCTCGAGAACCTCATGGTGATTGTCGCCAATCCTCGCCAGTTCAAGATCCCCGACTGGTTTTTGAATAGGAAAAAGGATTATAAGGATGGAAGGTATTCTCAGGTTGTTTCCAATGCATTGGACACGAAACTGAGGGATGATCTGGAGCGGTTGAAGAAAATAAGGAATCACCGTGGTCTCCGGCACTACTGGGGTCTTCGAGTGCGTGGGCAGCACACCAAGACAACTGGCCGCAGGGGAAAGACTGTTGGTGTCTCGAAGAAGCGATGA 750 0.4707 MDPPMWSLRDVIAYLPSGHMDLYLISSIMEKVLYILVDLHGQGKFNGNLQPGNIYIDSKGFVTLVEFDFLSSLSESNATLERCRSIRWKALRTGFHWMSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELENLMVIVANPRQFKIPDWFLNRKKDYKDGRYSQVVSNALDTKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00781 249 SUPERFAMILY S13-like H2TH domain 110 249 IPR010979 GO:0003676
Eupl12g00781 249 Gene3D 30s ribosomal protein s13, domain 2 189 239 IPR027437 -
Eupl12g00781 249 ProSitePatterns Ribosomal protein S13 signature. 218 231 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Eupl12g00781 249 Hamap 30S ribosomal protein S13 [rpsM]. 109 249 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Eupl12g00781 249 Gene3D - 98 177 - -
Eupl12g00781 249 FunFam 40S ribosomal protein S18 98 177 - -
Eupl12g00781 249 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 99 249 - -
Eupl12g00781 249 Pfam Ribosomal protein S13/S18 111 239 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Eupl12g00781 249 FunFam 40S ribosomal protein S18 189 240 - -
Eupl12g00781 249 ProSiteProfiles Ribosomal protein S13 family profile. 112 242 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Eupl12g00781 249 SUPERFAMILY Protein kinase-like (PK-like) 6 92 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00781 Eupl-Chr12 23382985 23391494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00781 98 249 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 94.737 2.56e-105 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00781 K02964 - nnu:104596533 297.36