LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl12g00727	ATGGATTTGATTGGTGAGAAAGACAGAAGCGTTGGGAAAGCTGAGAAGTCAGACATCAGAGATGAAGCATTGAGTTCGAAGGTGAATGGTGTCGGAAGTTTTAGTAACAAAGATATGTTTTTCAGAGCGGATAAGATTGATTTGAAGAGCTTGGATGACCAGCTGGAGAAGCACCTTAGCAGAATCTGGTCGAGGGGCATGGAGGCCCAAAGGCCAAAGGAAGAATGGGAGATCGATTTGTCTAAATTGGATATGAGGAATGTTATAGCTCATGGGACTTATGGTACCGTATACCGAGGTGTTTACGATGGCCAAAATGTTGCAGTGAAGCTTTTGGATTGGGGAGAGGATGGGATCGCCACAACCGCTGAAACTGCTGCTCTTCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCATAAGCTTGACAATCCAAACGTCACAAAGTTTGTTGGAGCTTCAATGGGAACTTCAAATCTTAAGATTCCTCTCCAAAATCCTTCAAGTGACGGTCGTGATTCCCTTCCTTCTAGAGCATGTTGTGTTGTTGTGGAGTACCTTCCGGGTGGGACACTAAAGCAATTCTTAATAAGAAATACACGAAAAAAACTTGCCTTTAAGATTGTTATTCAACTTGCTTTGGATCTCTCTAGAGGTTTGAGCTATCTACATTCAAAGAAGATAGTACATCGTGATGTTAAAACAGAGAATATGTTACTAGATGCTCAGAGAACTCTAAAAATTGCCGATTTTGGTGTAGCTCGCGTTGAAGCTCAAAATCCAAGTGACATGACTGGAGAAACTGGTACCCTAGGGTATATGGCCCCAGAGGTCCTCGATGGTAAACCTTACAATAGGAGATGTGATGTGTACAGCTTTGGCATATGTTTATGGGAAATCTACTGCTGTGACATGCCATACCCTAATCTAAGCTTCGCTGAAGTCTCATCCGCAGTTGTTCGACAGAGTTTACGACCAGAAATCCCTAGATGTTGCCCGAGCTCATTCGCAAACATAATGCGAAAATGTTGGGATGCAAACGCGGAAAAACGCCCTGACATGGATGAGGTGGTGAGGTTGTTGGAGGCAATCGATACAAGCAAGGGAGGAGGCATGATACCTGATGACCAGGTTCATGGGTGTTTCTGTTTCAGCAAAGCTCGTGGTCCTTGA	1173	0.4425	MDLIGEKDRSVGKAEKSDIRDEALSSKVNGVGSFSNKDMFFRADKIDLKSLDDQLEKHLSRIWSRGMEAQRPKEEWEIDLSKLDMRNVIAHGTYGTVYRGVYDGQNVAVKLLDWGEDGIATTAETAALRASFRQEVAVWHKLDNPNVTKFVGASMGTSNLKIPLQNPSSDGRDSLPSRACCVVVEYLPGGTLKQFLIRNTRKKLAFKIVIQLALDLSRGLSYLHSKKIVHRDVKTENMLLDAQRTLKIADFGVARVEAQNPSDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPNLSFAEVSSAVVRQSLRPEIPRCCPSSFANIMRKCWDANAEKRPDMDEVVRLLEAIDTSKGGGMIPDDQVHGCFCFSKARGP*	391

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl12g00727	390	Gene3D	Phosphorylase Kinase; domain 1	72	165	-	-
	Eupl12g00727	390	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	61	364	-	-
	Eupl12g00727	390	Gene3D	Transferase(Phosphotransferase) domain 1	187	372	-	-
	Eupl12g00727	390	SUPERFAMILY	Protein kinase-like (PK-like)	67	361	IPR011009	-
	Eupl12g00727	390	SMART	serkin_6	83	364	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl12g00727	390	FunFam	Kinase suppressor of Ras 1	72	166	-	-
	Eupl12g00727	390	ProSiteProfiles	Protein kinase domain profile.	83	364	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl12g00727	390	Pfam	Protein tyrosine and serine/threonine kinase	84	361	IPR001245	GO:0004672\|GO:0006468
	Eupl12g00727	390	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	228	240	IPR008271	GO:0004672\|GO:0006468
	Eupl12g00727	390	CDD	STKc_MAP3K-like	89	361	-	-
	Eupl12g00727	390	PRINTS	Tyrosine kinase catalytic domain signature	332	354	IPR001245	GO:0004672\|GO:0006468
	Eupl12g00727	390	PRINTS	Tyrosine kinase catalytic domain signature	184	197	IPR001245	GO:0004672\|GO:0006468
	Eupl12g00727	390	PRINTS	Tyrosine kinase catalytic domain signature	222	240	IPR001245	GO:0004672\|GO:0006468
	Eupl12g00727	390	PRINTS	Tyrosine kinase catalytic domain signature	288	310	IPR001245	GO:0004672\|GO:0006468
	Eupl12g00727	390	FunFam	Serine/threonine-protein kinase HT1	187	372	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl12g00727	Eupl-Chr12	22739221	22746447	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl12g00727	18	390	MAP Kinase Kinase Kinase	AT3G22750	76.842	0.0	621

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Eupl12g00727		PK_Tyr_Ser-Thr	5.4e-58	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl12g00727	-		-	qsu:112039336	676.396