Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00717 ATGGATGGTAAAGAAGATTTCAGCGTGTTTAATGGAGTTCCTGACCAATTCCACCAATTCATAGTTTCAAGAACAGCTCTCCCTCTCCCTCTCCCTCTCAGTCTCCCTCTTCATATCTCTCATCCCCTCACCTTCTCCGGTCTCAACCCTGCAACTTCTAATCAAGTATTCCAGTCTCACCTTCTTAACCTGCACCACCAATCCTTGACGCACAACGATGAAGAAAAAGAAGAAGAGAGAATAGTTGGTGGAAGCGTAAACCTGGAAGGATCAGTGAGATCTATATCAGAAATGATAGATCCATGGACGAAAGAGGAAGTACTTGCACTGTTGAAGATCAGATCTAACTTGGGGAATGGACCTTCAGATTTCATCTGGGAACATGTTTCAAGGAAACTTGCAGAGAATGGATTCATAAGGAGTGCAGAGAAATGCAAGGAGAAATTTGAAGAGGAGAGCAAATATTACAACACTGGTACTTATGATAAGAATTACTGGTCTTTTAATGAGCTTGAAGCACCCTATAAAGGTGAAAACCCTAAGTTCATAGCTGAAAAGTTGGTAAAAACCAATGGAGAAGGAGGGAAGACGGGTCTAAATTTGGAAGGGGACTCAGGACATGAGACCCTAGAAAACCCACCTCTAGAAAACAATTATGTGGTGAAAAGTTCAAATAAAAAGAAGAGAAGAAGGTACCATAAACTTGAATTGCTCAAGGGTTTCTGTGAAGAAATGGTGAACAAGATCATAGTTCAACAAGAAGAAAGGCACATGAAGATTTTAGAGGATGTGGAGAGGAGAGAGGAAGAAAGAGTTGCTAGAGAAGAAGCTTGGAAAAAGAAAGAGATGGCTAGGATTAACAAGGAGATTGAAATTATGGAACATCAGCATACCATTGCATGTGAAAGAGAGGCTACAATCATTGAGTTCTTGAAGAAATTAACATCAAACCCATCTCAAAACCAAGGTCTTATGAAAAATGACTATCTTCTTAAGACACCCGCTTCACCTTGCATAATTCCAACGCAAAACCCTAATTCTATATCTAGGTGTACCACCCAAAAAAGCCCAAATTTACCCACTTCATCTACTATGATCCAACCCCACCAAAACCCTACTAATACAACCCAAAACAACCCAAATCTACCCACATCATCTACTATAGCCCTAACACCCCAAAACCCTAATTCTAATACTACCCAAAAAACCATATCCAATGACAGAGAAGACCATGGTAAGAGATGGCCAAGAGAAGAAGTGAACTCCTTGATAAACCTAAGGTGCAATTTGCATAGTAGTGCAGAAGAAAAGGAAGGAACCAGGGTTTCCATATGGGAAAAAGTATCAGAAGGGATGTTGCAGTTGGGTTATAAGAGAAGTGCAAAAAAGTGTAAAGAGAAATGGGAGAACATAAACAAGTACTTCAGAAAAAACAAGGATGACAACAAGAAGAGATCTTCAAACTCCAATACATGTCCTTATTTTCACCAGTTGAGCAGTTTGTACAATCAAGGGACGCTCATGTTTCCCTCCGAAGGACCAGAAAACCGCTCAAGTTCACTGGAAAACCACTCGGCTACGCCGGAAATCCGCTTTAGACCTTCTTCAGATGGTTTTAATGATGCAATTGTGCATGGGGATGAAGATGAAGGTGAGATAAACATAGTCCAAGTACCCGTAGATTTTGAATACTAA 1695 0.4041 MDGKEDFSVFNGVPDQFHQFIVSRTALPLPLPLSLPLHISHPLTFSGLNPATSNQVFQSHLLNLHHQSLTHNDEEKEEERIVGGSVNLEGSVRSISEMIDPWTKEEVLALLKIRSNLGNGPSDFIWEHVSRKLAENGFIRSAEKCKEKFEEESKYYNTGTYDKNYWSFNELEAPYKGENPKFIAEKLVKTNGEGGKTGLNLEGDSGHETLENPPLENNYVVKSSNKKKRRRYHKLELLKGFCEEMVNKIIVQQEERHMKILEDVERREEERVAREEAWKKKEMARINKEIEIMEHQHTIACEREATIIEFLKKLTSNPSQNQGLMKNDYLLKTPASPCIIPTQNPNSISRCTTQKSPNLPTSSTMIQPHQNPTNTTQNNPNLPTSSTIALTPQNPNSNTTQKTISNDREDHGKRWPREEVNSLINLRCNLHSSAEEKEGTRVSIWEKVSEGMLQLGYKRSAKKCKEKWENINKYFRKNKDDNKKRSSNSNTCPYFHQLSSLYNQGTLMFPSEGPENRSSSLENHSATPEIRFRPSSDGFNDAIVHGDEDEGEINIVQVPVDFEY* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00717 564 ProSiteProfiles Myb-like domain profile. 414 472 IPR001005 -
Eupl12g00717 564 Coils Coil 250 271 - -
Eupl12g00717 564 PANTHER FI21293P1 71 527 - -
Eupl12g00717 564 MobiDBLite consensus disorder prediction 388 412 - -
Eupl12g00717 564 MobiDBLite consensus disorder prediction 507 530 - -
Eupl12g00717 564 Gene3D - 102 158 - -
Eupl12g00717 564 Gene3D - 415 477 - -
Eupl12g00717 564 MobiDBLite consensus disorder prediction 507 537 - -
Eupl12g00717 564 Pfam Myb/SANT-like DNA-binding domain 413 500 IPR044822 -
Eupl12g00717 564 Pfam Myb/SANT-like DNA-binding domain 100 158 IPR044822 -
Eupl12g00717 564 ProSiteProfiles Myb-like domain profile. 101 153 IPR001005 -
Eupl12g00717 564 SMART sant 98 155 IPR001005 -
Eupl12g00717 564 SMART sant 411 474 IPR001005 -
Eupl12g00717 564 CDD GT1 413 479 - -
Eupl12g00717 564 MobiDBLite consensus disorder prediction 388 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00717 Eupl-Chr12 22473136 22475685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00717 412 530 Trihelix Transcription Factor Family AT1G76890 32.500 2.31e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Eupl12g00717 Myb_DNA-bind_4 6.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00717 - - nnu:104598654 560.066