LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl12g00700	ATGAATCCTCCAGGCCAAGTGAAAGAAGAGTTCTTGGGTGCGAGTTCATCTTATTCTGGCGAGCCACCCAAGGTTCTTTCTCCCCAGCCAATGGAAGGCCTCCATGACGCAGGCCCCCCTCCTTTTCTCAACAAAACCTACGACATGGTTAACGACCCAAGCACGGATCATATAGTATCTTGGAGCAGAGCGAGCAACAGCTTTGTTGTCTGGGATCTCAACACATTTTCCATGAATCTTCTCCCCAGATACTTCAAGCACAACAATTTCTCCAGTTTTGTTAGACAGCTCAATACTTATGGCTTTAGAAAGGTGGATCCAGATAGGTGGGAGTTTGCCAATGAAGGATTTCTCAGAGGGCGGAAACATCTTCTAAAGAACATAAGGAGGAGGAAGGCATCTTCACAGCCTCCTCATCAACAGGAAACTTTGGGCTCTTGTGTAGAAGTTGGGTGGTTTGGATTAGATGGAGAGATCGATCGGTTGAGGCGTGACAAACAAGTTCTAATGATGGAATTAGTGAAACTTAGGCAACACCAACAGAACACACGAGCTCACCTTCAAGTTATGGAGCAAAGGCTTCAAGGAACAGAGCAGAAGCAGCAACAGATGATGACTTTCTTGGCAAGAGCCATGCAGAACCCCACTTTTATTCAACAGTTGGTCCAACAGAAGGAGAGAAGAAAGGAACTTGAAGAAGCAATTACTAAGAAAAGAAGAAGGCCAATTGATCAAGGGCCCAGTGAATTGAGCCAAAGTCTTGATGGAGAGAATCTCATTAAAGTTGAACCTCAGGACTTTGGAGATCTTTATGGGTGTGAAGCCTCAGAGCTGGAGACACTTGCATTGGAGATGCAAGGATTGAGTAAAGTTGGAAAGGAGCAAGAGGAAGCACAAGAAGAGCAAGAACCAGAAGTTGGGATTGGAGACAAAGTACTGGATGAGGGATTTTGGGAAGAATTGTTGTATGAGAGGTTTGGGGAAGAAAAGGGTATACTAGACGTCGAAGGTAGGGAAAACGAAGATGTGAGTGTCTTGGCCGATCGATTGGGTTACTTAGCTTCTGCTCCAATGTAA	1077	0.4522	MNPPGQVKEEFLGASSSYSGEPPKVLSPQPMEGLHDAGPPPFLNKTYDMVNDPSTDHIVSWSRASNSFVVWDLNTFSMNLLPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGRKHLLKNIRRRKASSQPPHQQETLGSCVEVGWFGLDGEIDRLRRDKQVLMMELVKLRQHQQNTRAHLQVMEQRLQGTEQKQQQMMTFLARAMQNPTFIQQLVQQKERRKELEEAITKKRRRPIDQGPSELSQSLDGENLIKVEPQDFGDLYGCEASELETLALEMQGLSKVGKEQEEAQEEQEPEVGIGDKVLDEGFWEELLYERFGEEKGILDVEGRENEDVSVLADRLGYLASAPM*	359

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl12g00700	358	PRINTS	Heat shock factor (HSF) domain signature	42	65	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Eupl12g00700	358	PRINTS	Heat shock factor (HSF) domain signature	93	105	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Eupl12g00700	358	PRINTS	Heat shock factor (HSF) domain signature	80	92	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Eupl12g00700	358	FunFam	Heat shock transcription factor 1	35	132	-	-
	Eupl12g00700	358	SUPERFAMILY	"Winged helix" DNA-binding domain	38	131	IPR036390	-
	Eupl12g00700	358	Gene3D	-	35	132	IPR036388	-
	Eupl12g00700	358	ProSitePatterns	HSF-type DNA-binding domain signature.	81	105	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Eupl12g00700	358	SMART	hsfneu3	38	131	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Eupl12g00700	358	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	28	253	IPR027725	-
	Eupl12g00700	358	Pfam	HSF-type DNA-binding	42	131	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Eupl12g00700	358	Coils	Coil	159	179	-	-
	Eupl12g00700	358	Coils	Coil	221	241	-	-
	Eupl12g00700	358	MobiDBLite	consensus disorder prediction	1	40	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl12g00700	Eupl-Chr12	22222612	22226029	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl12g00700	21	356	HSF	AT3G22830	53.804	3.74e-130	377

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Eupl12g00700		HSF_DNA-bind	6.5e-33	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl12g00700	K09419		-	nnu:104613219	504.212