Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00698 ATGTTGCCTGCAACCATGTCTAATTCAACTTCTATGTCTGAGGAAGCTAGTGTTTCTTCTGGGACTAGAGTTCAAGACTTTGGTAGCTTAAATCCCATGCTCTCAGCCGTTTCAACTCACCAACCACAGAAGATTAAGAAGAAACGAAACCTCCCTGGAAACCCAGACCCAGATGCTGAAGTGATTGCTTTATCTCCAAAATCTCTATTGGCTACCAATAGATTTTTGTGTGAGATCTGCAACAAGGGTTTTCAGAGAGATCAGAATCTTCAGCTTCATAGGAGAGGTCATAACCTTCCATGGAAGCTGAAGCAGAGAACCAGTAAAGAGATTAGAAAGAAAGTTTATGTGTGCCCAGAGCCCTCATGTGCTCATAACCACCCATCAAGGGCTCTTGGTGATCTCACAGGAATCAAGAAACACTTCTGCAGAAAACATGGAGAGAAGAAATGGAAGTGTGAGAAGTGCTCAAAGAGATATGCAGTTCAATCAGATTGGAAGGCTCATTCAAAAACCTGTGGAACAAGAGAATATAGATGTGACTGTGGAACCCTTTTCTCAAGGAAGGACAGCTTCATCACCCACAGAGCCTTCTGTGATGCTTTAGCTGAAGAGAGTGCAAGACTCACCACCAACCCAACAGATCACTCTCTCCATCTCCATCCACAAAACCTATCTTCTATCTTCCCTTTCCAAACCCACCAACAACAACACTTCCCAAACCCACCAACCAACATCTCCATCACTTCATGGGACCCACCTCAAAACCCTAACCCTAGCTCAAATCAAATTCAAATCAAGCCTGAAACTCATCATCATCATATTCCAACCATCTCTCCTTTCTTCCAAGAACCACAACACAAACCGTTGATCACATCGACTTTTCTTCAACATCCCCATATGATGATCTCCAATAGCAGCAGCAACACCAATACAGCTCATATGTCAGCTACTGCACTCCTTCAAAAAGCTGCTCACGTTGGTGCAACGGCTATTACAGGCGCCACTCAAGCTCAATCAGTAGGTCACATGGCGTCGTCCATGACTCGGTTAGCAACGGACGAGTTCGGAACAGTGAGTCACATGGGCACACGAATCTCGCCGGAGTATCTGGGATTTCCTTCAGGAAATCTTGCCACTTGGCAGAAGAACGACCGTCTTACGAGAGACTTTCTGGGTCTGCAGGCAGGAGAGTGTGGTAACGGTGATGGAAGCGTTAACGTTAGGGATCTGCTATCGTTCACTACTGGGGCCGTTGAATTCCCACCGTATGATCGTGACCACTCACTGATGAAGCCCCCGGGCTTTGGATTTGCTGAAACGTGGGGAGATTGCTGA 1338 0.4611 MLPATMSNSTSMSEEASVSSGTRVQDFGSLNPMLSAVSTHQPQKIKKKRNLPGNPDPDAEVIALSPKSLLATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPSCAHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLTTNPTDHSLHLHPQNLSSIFPFQTHQQQHFPNPPTNISITSWDPPQNPNPSSNQIQIKPETHHHHIPTISPFFQEPQHKPLITSTFLQHPHMMISNSSSNTNTAHMSATALLQKAAHVGATAITGATQAQSVGHMASSMTRLATDEFGTVSHMGTRISPEYLGFPSGNLATWQKNDRLTRDFLGLQAGECGNGDGSVNVRDLLSFTTGAVEFPPYDRDHSLMKPPGFGFAETWGDC* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00698 445 MobiDBLite consensus disorder prediction 236 262 - -
Eupl12g00698 445 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Eupl12g00698 445 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Eupl12g00698 445 Gene3D Classic Zinc Finger 108 199 - -
Eupl12g00698 445 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 398 IPR031140 -
Eupl12g00698 445 FunFam protein indeterminate-domain 12-like 54 122 - -
Eupl12g00698 445 Gene3D Classic Zinc Finger 71 98 - -
Eupl12g00698 445 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
Eupl12g00698 445 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Eupl12g00698 445 MobiDBLite consensus disorder prediction 1 25 - -
Eupl12g00698 445 SMART c2h2final6 116 146 IPR013087 -
Eupl12g00698 445 SMART c2h2final6 151 171 IPR013087 -
Eupl12g00698 445 SMART c2h2final6 75 97 IPR013087 -
Eupl12g00698 445 MobiDBLite consensus disorder prediction 37 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00698 Eupl-Chr12 22186617 22191615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00698 15 432 IDZ Gene Family AT4G02670 54.378 6.20e-133 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl12g00698 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00698 K25870 - nnu:104613223 646.351