Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00651 ATGGCTACATACGAGAACGATCTTAACCTCGAGGCGACCGAGCTTAGATTAGGCTTGCCCGGGACCGATGAATCCGAGAAACAAACACTACCTCCTAGTGTTAGGAACAACAAAAGAGCATTGTCTGAGATAGGAGATGAGTGTGGATCCAAGAACAATTCTAGCGTGTCGTCGGATGCGCGAGATAGTGATCGGGAAACCGCACCCGCTTCTAAGCAACAAGTAGTGGGGTGGCCGCCGATCCGATCGTACCGGAAAAATAGCCTTCAAGCAAAGAAGATCGAGACCGAGACGTCGGGAATTTACGTGAAAGTGAGCATGGATGGAGCTCCTTACTTGAGAAAGATTGATCTCAAGGTCTACAATGGCTACCCTGAACTCCTCAAGGCCTTAGAGAACATGTTCAAATTTACTATTGGTCAGTACTCAGAGAGGGAAGGCTACAATGGGTCAGAATATGTACCTACTTATGAAGACAAAGATGGTGATTGGATGCTGGTTGGAGATGTTCCATGGGATATGTTCATCTCTTCATGCAAGAGGTTGAGAATCATGAAAGGATCAGAAGCTAGAGGCTTGGGGTCTGGTGTATAA 594 0.468 MATYENDLNLEATELRLGLPGTDESEKQTLPPSVRNNKRALSEIGDECGSKNNSSVSSDARDSDRETAPASKQQVVGWPPIRSYRKNSLQAKKIETETSGIYVKVSMDGAPYLRKIDLKVYNGYPELLKALENMFKFTIGQYSEREGYNGSEYVPTYEDKDGDWMLVGDVPWDMFISSCKRLRIMKGSEARGLGSGV* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00651 197 Gene3D - 94 197 - -
Eupl12g00651 197 FunFam Auxin-responsive protein 95 197 - -
Eupl12g00651 197 Pfam AUX/IAA family 13 194 IPR033389 -
Eupl12g00651 197 MobiDBLite consensus disorder prediction 1 77 - -
Eupl12g00651 197 SUPERFAMILY CAD & PB1 domains 97 186 - -
Eupl12g00651 197 ProSiteProfiles PB1 domain profile. 100 187 IPR000270 GO:0005515
Eupl12g00651 197 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 191 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00651 Eupl-Chr12 21293580 21295240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00651 87 195 B3 DNA Binding Superfamily AT2G46530 34.862 1.77e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Eupl12g00651 AUX_IAA 3.8e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00651 K14484 - nnu:104612448 322.013