Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00650 ATGGCGACAGTGCTCGGCGTAGAGCGAGACAACAAGTATATCATGAACTTCGAAGAGACGGAATTGCGTCTCGGGTTGCCCGGTGGAGGAGGAAGCGAAGGCGAGACAGGAAAGAATTCAGGGAAGAGAGGCTTCTCTGAGACTATAGATTTGAAGCTTAATCTTCCGTCGAAAGAATCGGAGACGGATCCGATCGATAACATGAAGAATTCACCTATGGAGAAGAAACTCCTTCCTTGCATTACTAATGATCCAGCAAAACCATCAGCTCCCAAGGCACAGGTAGTGGGTTGGCCACCAGTACGAGCGTTCCGCAAGAATATCCTGGCCGTCCAGAAGAGCAACACTGAGGAGGAGAAAGTTGGTAGCAGCGTAGCCTTCATAAAGGTTAGCATGGATGGTGCACCTTACCTACGTAAGGTTGACTTGAAGATGTACAAAAGCTACCAAGAACTCTCTGATGCCTTAGGCAAGATGTTCAGTTCCTTCACAATTGGCAATTGCGGGTCCCAAGGAATGATGGATTTCATGAATGAGAACAAGTTGATGGATCTTTTGAACGGCTCAGAATACTTGCCTACCTATGAAGATAAGGATGGTGACTGGATGCTCGTCGGCGATGTCCCGTGGGGGATGTTTGTTGAATCATGCAAGCGCTTGCGTATAATGAAAGGATCGGACGCAATTGGACTTGCACCAAGAGCAGTGGAGAAATTGAAGAACAGAAGCTGA 732 0.4768 MATVLGVERDNKYIMNFEETELRLGLPGGGGSEGETGKNSGKRGFSETIDLKLNLPSKESETDPIDNMKNSPMEKKLLPCITNDPAKPSAPKAQVVGWPPVRAFRKNILAVQKSNTEEEKVGSSVAFIKVSMDGAPYLRKVDLKMYKSYQELSDALGKMFSSFTIGNCGSQGMMDFMNENKLMDLLNGSEYLPTYEDKDGDWMLVGDVPWGMFVESCKRLRIMKGSDAIGLAPRAVEKLKNRS* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00650 243 SUPERFAMILY CAD & PB1 domains 124 224 - -
Eupl12g00650 243 MobiDBLite consensus disorder prediction 23 71 - -
Eupl12g00650 243 MobiDBLite consensus disorder prediction 54 70 - -
Eupl12g00650 243 ProSiteProfiles PB1 domain profile. 125 225 IPR000270 GO:0005515
Eupl12g00650 243 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 230 IPR003311 GO:0005634|GO:0006355
Eupl12g00650 243 FunFam Auxin-responsive protein 120 235 - -
Eupl12g00650 243 Gene3D - 120 237 - -
Eupl12g00650 243 Pfam AUX/IAA family 19 234 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00650 Eupl-Chr12 21271309 21273658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00650 114 222 B3 DNA Binding Superfamily AT3G61830 33.945 6.83e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Eupl12g00650 AUX_IAA 9e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00650 K14484 - nnu:104612447 361.303