Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00643 ATGCCAAGGGGTTGCGAGGTTTGGGAGATGACGAGCCAGGCGGTGAAAGTTCGGAGGGAGACGCTCGCGGCGTGCATGACATGCCCTCTGTGCAATAAGCTGTTGAGGGAAGCTACGACCATATCTGAATGCCTTCATACGTTTTGCAGGAAGTGCATATATGAGAAACTCACAGATGAGGAGGTAGATTGCTGTCCAATATGCAATATCGATCTGGGTTGTGTTCCAGTGGAGAAGCTCAGGCCGGACCACAATTTACAAGATGTAAGGGCCAAGATTTTTCCTTTCAAAAGGAGGAAGGTTAAGGCACCTGAAATTGTACCTTCAATTTCATTGCCAGTTAGAAGAAAAGAGAGATCACTCTCATCACTAGTGGTCAGCACTCCCAGAGTATCGACACAGACCGGCTTGACTGGAAGAAGAACAAAAGCTGTTGCAAGAAAGGCTGCTGCTTTACGGGGATCCAGTTTTTCCATTGAGGAACCCATTAAAAAAGAGGAAGATCCTGTGGAAGATCGTCCCGAGAGCTCAAGTTCACCTGAGACCCTGAACAAGATTGCTCAAAATAAAAGGCAGAACTCTTCTACTGCAGAGCCGTCTAACCACTACACACCCAAGAAAAATACAGAGAATGGTACTGAGCCATGGGCAGGGAAAGTTGATCTCTGGAAACCCTTAAACTGCCTGGTAGAAGCTGCAAATAGAACAAAGTCTTTTAAGTTCAATTCACAAGGGTCTGTTGCCAAAACTGAACCACCCAATGCCCTCGATGATGAAGTACATGTGCCTAAAACCAAAGTTAGGGAGCATGCGCACAAATCGAAATTCCAGGACAACAAGTATGGCACTACTCCTGCTCCTCTGGGATTGGTGAAACCTAGAAAGTTGCATGGGATGGGCCGAAAAAGGGCAGCTGCTTCCAAGAAGCTGGGCAACTTAGCTCAAGCTGCCCTTGATGCTTCTCATGTTAAATGTGACAGAAGAATTAGTCCAATTTGGTTCACATTAGTAGCTTCTGAAGATCAGGAAGGAGATGCATCCTTGCCACAGATTTCTTCGTGTTACTTGAGGATAAAGGATGGTAATGTACCTGTTTCATTCATTCAAAAGTATCTCGTGAAGAAACTTGATCTTACAAGTGAAGCTGAGGTGGAGATCACATGCCGCGGCCAGCCAGTGGTCCCCACATTGCAACTACATAACTTAGTAGATTTGTGGCTACAGACAGCATCAACATCGCAAAGAGTTCCAGCATCCGTTGGCACCTCAGCCAAGGATTTTGTGATGGTGCTGGCCTATGCACGCAAGGTTCAGCTCCCTTAA 1323 0.4633 MPRGCEVWEMTSQAVKVRRETLAACMTCPLCNKLLREATTISECLHTFCRKCIYEKLTDEEVDCCPICNIDLGCVPVEKLRPDHNLQDVRAKIFPFKRRKVKAPEIVPSISLPVRRKERSLSSLVVSTPRVSTQTGLTGRRTKAVARKAAALRGSSFSIEEPIKKEEDPVEDRPESSSSPETLNKIAQNKRQNSSTAEPSNHYTPKKNTENGTEPWAGKVDLWKPLNCLVEAANRTKSFKFNSQGSVAKTEPPNALDDEVHVPKTKVREHAHKSKFQDNKYGTTPAPLGLVKPRKLHGMGRKRAAASKKLGNLAQAALDASHVKCDRRISPIWFTLVASEDQEGDASLPQISSCYLRIKDGNVPVSFIQKYLVKKLDLTSEAEVEITCRGQPVVPTLQLHNLVDLWLQTASTSQRVPASVGTSAKDFVMVLAYARKVQLP* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00643 440 MobiDBLite consensus disorder prediction 176 211 - -
Eupl12g00643 440 SUPERFAMILY RING/U-box 23 92 - -
Eupl12g00643 440 MobiDBLite consensus disorder prediction 125 144 - -
Eupl12g00643 440 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 10 438 IPR044807 GO:0004842
Eupl12g00643 440 MobiDBLite consensus disorder prediction 157 216 - -
Eupl12g00643 440 CDD RING-HC_PCGF 26 69 - -
Eupl12g00643 440 ProSiteProfiles Zinc finger RING-type profile. 28 69 IPR001841 -
Eupl12g00643 440 SMART ring_2 28 68 IPR001841 -
Eupl12g00643 440 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Eupl12g00643 440 MobiDBLite consensus disorder prediction 125 140 - -
Eupl12g00643 440 MobiDBLite consensus disorder prediction 159 175 - -
Eupl12g00643 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 115 IPR013083 -
Eupl12g00643 440 Pfam Zinc finger, C3HC4 type (RING finger) 28 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00643 Eupl-Chr12 21150126 21161156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00643 15 359 C3H Transcription Factor Family AT2G30580 52.299 3.87e-111 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00643 K16277 - nnu:104612433 700.279