Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00635 ATGCTCAAGCAACTGGGAAGGGCGCTTGATGATGGGAAGGGGTTAGCTAGAACGATCGCCGATGTTAAGGATCCGAGTGATCGAGGGGTTCTTCACGCCGCTGCTGCACATGGAAAGATCAATGTTTGCAAGTACGTGCTTGAGGAATTGAAGCTAAATGTAGATATGAAAGATGACAAAGGTGAAACTCCTCTGTTTCAAGCAGCCATAGGTGGGCACTTAAGCACTGCAGTATATCTTCTTGAAAACGGTGCTGATCCTGCTACAGTAAATAATTCAAGCCACACTCCCTTGCATTATGCTGCAGGACAAGGACACAGAGAGCTCCTATGCGTGTTACTTTCAAAAGGTGTTGATGTGAATGCCCTCAGTGATACTGGCACTCCACTACTATTGGCTGCGGGTTGTGGCAGGCAAGATGCTGTTAAGATTTTGTTGGATTACCATGCTGATCCTAATTTTGTCGTTAGTCATCTGCATACACCTTTGGCAATATGTATTTTTGCCAAGTCGTTGCAATGCACAAAGCTGTTGATTCAGGCAGGCGCCGATCCAAATGGTAAATCATGTGGAGCAACACCTTTAGGAGTTGCAGCTTTCAAAGGGGAAACGGAAATTATCAAATTCTTATTAAAATCTGGAGCTGATCCAAACATCACAAATAATACCGAGCAGAAGCCGATAGAAATTGCTGCATTACATGGTAATCATCGAGATGTGAGAACTCTTTTTCCTGTTACCTCTCCCATTCCAACACACTCGGATTGGAGCGTTGCTGGAATAATTAGGCATGTGCATTCTGAAGAAGCTATACAACAGTTGAAGCTCAAGGTAAAGAAGAAGTTTTTGGAGGCAAAATCGAAGGGAGAAGATGCGTTTAAGAGAAATGAGTATAGCATTGCAGTTTATTGGTACACAGAGGCTATCAATGCAGACCCCATGGATGCAACTGTACTATCTAACAGGAGTCTGTGTTGGGCCCATATGAAAGATGGAGATTTTGCCTTATCTGACGCTGAGGCTTGCATAATGCTGAGGCCTGACTGGCCAAAGGCATACTACAGGGCAGGTGTCGCATGGAATCTACTGAAGCAGTTTGATGTAGCAGCAGATGCATTCTTTGAGGGTTTGAAGCTGGATCCTGAAAACAAGGAGCTTCGAAATGCTTTCCAGGAAGCTGTTGAAGCTAGAATGAGCTCTATTGGCATTCAACAGGAAAGATGA 1224 0.4428 MLKQLGRALDDGKGLARTIADVKDPSDRGVLHAAAAHGKINVCKYVLEELKLNVDMKDDKGETPLFQAAIGGHLSTAVYLLENGADPATVNNSSHTPLHYAAGQGHRELLCVLLSKGVDVNALSDTGTPLLLAAGCGRQDAVKILLDYHADPNFVVSHLHTPLAICIFAKSLQCTKLLIQAGADPNGKSCGATPLGVAAFKGETEIIKFLLKSGADPNITNNTEQKPIEIAALHGNHRDVRTLFPVTSPIPTHSDWSVAGIIRHVHSEEAIQQLKLKVKKKFLEAKSKGEDAFKRNEYSIAVYWYTEAINADPMDATVLSNRSLCWAHMKDGDFALSDAEACIMLRPDWPKAYYRAGVAWNLLKQFDVAADAFFEGLKLDPENKELRNAFQEAVEARMSSIGIQQER* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00635 407 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 3 394 - -
Eupl12g00635 407 ProSiteProfiles Ankyrin repeat profile. 125 157 IPR002110 GO:0005515
Eupl12g00635 407 PRINTS Ankyrin repeat signature 94 109 IPR002110 GO:0005515
Eupl12g00635 407 PRINTS Ankyrin repeat signature 206 220 IPR002110 GO:0005515
Eupl12g00635 407 ProSiteProfiles Ankyrin repeat region circular profile. 60 86 - -
Eupl12g00635 407 ProSiteProfiles Ankyrin repeat profile. 60 92 IPR002110 GO:0005515
Eupl12g00635 407 SMART ANK_2a 158 187 IPR002110 GO:0005515
Eupl12g00635 407 SMART ANK_2a 125 154 IPR002110 GO:0005515
Eupl12g00635 407 SMART ANK_2a 190 219 IPR002110 GO:0005515
Eupl12g00635 407 SMART ANK_2a 26 56 IPR002110 GO:0005515
Eupl12g00635 407 SMART ANK_2a 60 89 IPR002110 GO:0005515
Eupl12g00635 407 SMART ANK_2a 93 122 IPR002110 GO:0005515
Eupl12g00635 407 SMART tpr_5 350 383 IPR019734 GO:0005515
Eupl12g00635 407 SMART tpr_5 316 349 IPR019734 GO:0005515
Eupl12g00635 407 SMART tpr_5 282 315 IPR019734 GO:0005515
Eupl12g00635 407 ProSiteProfiles Ankyrin repeat region circular profile. 190 222 - -
Eupl12g00635 407 SUPERFAMILY TPR-like 281 394 IPR011990 GO:0005515
Eupl12g00635 407 SUPERFAMILY Ankyrin repeat 20 244 IPR036770 -
Eupl12g00635 407 ProSiteProfiles Ankyrin repeat profile. 93 125 IPR002110 GO:0005515
Eupl12g00635 407 ProSiteProfiles Ankyrin repeat region circular profile. 93 122 - -
Eupl12g00635 407 Gene3D - 110 248 IPR036770 -
Eupl12g00635 407 ProSiteProfiles Ankyrin repeat profile. 190 222 IPR002110 GO:0005515
Eupl12g00635 407 Pfam Ankyrin repeats (3 copies) 31 122 IPR002110 GO:0005515
Eupl12g00635 407 Pfam Ankyrin repeats (3 copies) 165 244 IPR002110 GO:0005515
Eupl12g00635 407 Gene3D - 9 109 IPR036770 -
Eupl12g00635 407 ProSiteProfiles TPR repeat profile. 350 383 IPR019734 GO:0005515
Eupl12g00635 407 Gene3D Tetratricopeptide repeat domain 280 395 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00635 Eupl-Chr12 20753760 20863170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00635 42 281 Ion Channels AT4G32500 28.409 3.67e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00635 - - csin:114322716 451.44