Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00620 ATGGCGGTGGACATGCTCCATCTGCGTAAGGAGGGCTTCGCCGTTGCTGGTGGAGAGAAAGAGCAGGTGACGGCTGGGGTGCCGGTTAAGGAGGCACATTTTAGAGGCGTACGTAAGCGTCCATGGGGACGGTTCGCGGCTGAGATTCGAGATCCGTGGAAGAAGACGAGAAAATGGCTCGGAACCTTCGACACCGCTGAGGAGGCCGCGTTGGCTTACGACGACGCGGCAAGGAATCTCCGAGGACCCAAGGCTAAAACTAACTTCAGCGACGAAGGGATCGCAAGATCGATGATTTCTTCTGGAACGTTTCAGAATCATCTTCAGCAATGGAGGAGGGCCTATGTTGCCGGAGATGGACGGAATTTGTTCTCTTCCTCCGGATCTCCTGCAGTTATTCCGACATGTATCCCGACGGGTTCGGATTTTACTGGATATAAGTTCGAGGCTGTGGAGGTAGTGGTGAGAAGCGAGCAAGAGAAGAAGACGAGAAAGGAGGAGAAGAAACCGTTGTTGTTCGATCTTAATCTTCCGCCGCCGCTCTTCTGA 549 0.5355 MAVDMLHLRKEGFAVAGGEKEQVTAGVPVKEAHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAALAYDDAARNLRGPKAKTNFSDEGIARSMISSGTFQNHLQQWRRAYVAGDGRNLFSSSGSPAVIPTCIPTGSDFTGYKFEAVEVVVRSEQEKKTRKEEKKPLLFDLNLPPPLF* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00620 182 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 121 - -
Eupl12g00620 182 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Eupl12g00620 182 CDD AP2 32 91 IPR001471 GO:0003700|GO:0006355
Eupl12g00620 182 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Eupl12g00620 182 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
Eupl12g00620 182 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Eupl12g00620 182 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Eupl12g00620 182 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Eupl12g00620 182 SMART rav1_2 33 97 IPR001471 GO:0003700|GO:0006355
Eupl12g00620 182 FunFam Ethylene-responsive transcription factor 2 32 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00620 Eupl-Chr12 20592397 20593476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00620 30 182 AP2-EREBP Transcription Factor Family AT1G28360 39.459 1.48e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl12g00620 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00620 K09286 - nnu:104612420 223.016