Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00618 ATGGCGCCTGCTGAAGAAACGGTTGCAGTCGTTGAACCGGTTGTGGATCCGGTGCCGACCGAAGAGAAACCGGCGACGAAAGATGCGAAGAAGGTGAAAGCTCCGAAAGAGCCGAAGGCTAAGAAACCGGCCGGTCCGAGAAAATCTAAGGCTCCTCCTTCTCACCCGACATACTTAGAGATGATCAAAGAGGCAATCCTCGCTCTTAAAGAGAGGACTGGTTCAAGCCAGTATGCGATCACGAAGTTCGTCGAAGGCAAGCACCAACATCTCCCTCAGAACTACAAGAAGTATATTTCTGTTCAGCTTAAGAGGCTCGTCGTTGCTGGAAATCTCGTGAAGGTCAAGAACTCGTTTAAATTTCCTCCGTCGGTTCCATCGAAGCCAGCATCCTCCGTTGCCAAGAAGCCTGCAGCAGCTAAGCCGAAACCCAAGCCAAAGGCAGCCGCAAAGCCAAAGGCTGCATCGAAGCCAAAATCTGTTGCCAAAGCGAAGCCAGCTGCGAAGCCTAAAGCAATTACGGCCAAACCAAAGGCTGTTGTGAAGAGGAAAGCTGTGGCTAAGCCGAAGGCTGTGGCCAAGCCGAAGCCGAAAGCTAGACCCGCTAAGGCTGCGAGAACATCGACTAGGGCTTCTCCTGGAAAGAAAGTAGCGGCTGCGAAGCCGGTGGTGGCGCCTAAGAAAGCTCCGGCGAGACTTGTTAAGAAGCCGAAGAGTGTCAAGTCGCCGGTGAAGAAAGTTACGGCGAAGAAGGCGAAGAAGTGA 765 0.5281 MAPAEETVAVVEPVVDPVPTEEKPATKDAKKVKAPKEPKAKKPAGPRKSKAPPSHPTYLEMIKEAILALKERTGSSQYAITKFVEGKHQHLPQNYKKYISVQLKRLVVAGNLVKVKNSFKFPPSVPSKPASSVAKKPAAAKPKPKPKAAAKPKAASKPKSVAKAKPAAKPKAITAKPKAVVKRKAVAKPKAVAKPKPKARPAKAARTSTRASPGKKVAAAKPVVAPKKAPARLVKKPKSVKSPVKKVTAKKAKK* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00618 254 PANTHER HISTONE H1 25 247 - -
Eupl12g00618 254 PRINTS Histone H5 signature 41 62 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Eupl12g00618 254 PRINTS Histone H5 signature 147 161 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Eupl12g00618 254 PRINTS Histone H5 signature 197 216 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Eupl12g00618 254 PRINTS Histone H5 signature 68 85 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Eupl12g00618 254 MobiDBLite consensus disorder prediction 119 254 - -
Eupl12g00618 254 CDD H15 52 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl12g00618 254 Gene3D - 49 128 IPR036388 -
Eupl12g00618 254 MobiDBLite consensus disorder prediction 21 44 - -
Eupl12g00618 254 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 54 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl12g00618 254 MobiDBLite consensus disorder prediction 231 254 - -
Eupl12g00618 254 SMART h15plus2 52 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl12g00618 254 Pfam linker histone H1 and H5 family 55 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Eupl12g00618 254 SUPERFAMILY "Winged helix" DNA-binding domain 52 135 IPR036390 -
Eupl12g00618 254 MobiDBLite consensus disorder prediction 176 203 - -
Eupl12g00618 254 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00618 Eupl-Chr12 20557604 20559363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00618 56 180 Single Myb Histone (SMH) Gene Family AT1G72740 30.400 7.12e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00618 K11275 - mof:131152410 109.383