Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00574 ATGGCAAGCACCGAAGAATTCGAGAAAAAAGAAGAGAGAGAGAGAGAAAACCCAATCAAGTACCCAAATCCCACATCTCTCTCTAATGGAGGGGAACGAAAGCGGTCTGAGCTCTTACTACCACCACCACAACAGCAGCACCACCAGCACCAGCACCACCACAACGCCACCACAACCACCACCTCCTCCGGTACTAACGGGATATTTTCCAACCCCCATCACCACCACAACACGTCTTCCGGTCATTACTCCTCCTCCGAACCGACTCCTCTCGTTTTTTCTCCACATTCGGTGACCGGCAGAGCTCCCCTCGCCGCTTCAGCACCACCAGAGACTGTACGAAGGAAGAGAGGCAGACCGAGGAAGTACGGTACACCTGAAGCACCACCAACTGCCTCAGCCTCAGTTTCCTCAGCAAAGAAGGTCTCCACTTCTTCTCCTTCGCTTCCTCTGCCCTCTCCGCCTCGTAAGAAGGAATCCTCCTCCGCCTCTTCTCCGTCTTCTTCCAAGAAAAATCAGTTGGTTGCGCTCGGGAATGCAGGGCAAGGTTTTACACCACATGTCATTACTGTGGCGGCTGGAGAAGATGTGGCCCAGAAAATCATGTCATTCATGCAACAACGCAAGCGTGCAGTGTGTATTCTCTCAGCATCTGGTTCAATTTCTAATGCATCTCTCCGTCAGCCAGCCACATTGGGGGGCAATGTGACCTATGAGGGACGGTTTGAAATCCTTTCACTGTCAGGATCTTTCCTGCACAATGAGATAGGAGGAGCATCCTCGAGAACTGGTGGGCTCAGTGTGTGTTTGTCTGGTACAGATGGCCGCATTGTTGGAGGTGGAGTAGGTGGGCCTTTAAAGGCCGCAGGCCCTGTACAGGTAATTGCTGGTTCCTTTGTGATCGACACCAAAAAGGATGCTAGTGCTGATCTAAAAGTTGAGGCTTCTGCGAGCAAGTTGCCACCACCAGTAGTTGGAGCAACAGTTTCAAGTGTTGGCTTCCGATCCGCACCGGACTCTTCTGGAAGAATCTCAGTAAGGGGAAACAATGATCATCAAAATATTGGTGGAAGTAGTTTCATGCTACAACCTCGGGGATTGCATGCCATGCCTTCACGGTCAACTGACTGGAGGGGTGGCCTGGATGCTAGAAACAATGCAAATATTGACTTGACAGGAAGAACAGATCTTGGAGTATGCCAATCTCCTGAAGACGGGGACGACGAACAGCTTCGGGATTAA 1242 0.5113 MASTEEFEKKEERERENPIKYPNPTSLSNGGERKRSELLLPPPQQQHHQHQHHHNATTTTTSSGTNGIFSNPHHHHNTSSGHYSSSEPTPLVFSPHSVTGRAPLAASAPPETVRRKRGRPRKYGTPEAPPTASASVSSAKKVSTSSPSLPLPSPPRKKESSSASSPSSSKKNQLVALGNAGQGFTPHVITVAAGEDVAQKIMSFMQQRKRAVCILSASGSISNASLRQPATLGGNVTYEGRFEILSLSGSFLHNEIGGASSRTGGLSVCLSGTDGRIVGGGVGGPLKAAGPVQVIAGSFVIDTKKDASADLKVEASASKLPPPVVGATVSSVGFRSAPDSSGRISVRGNNDHQNIGGSSFMLQPRGLHAMPSRSTDWRGGLDARNNANIDLTGRTDLGVCQSPEDGDDEQLRD* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00574 413 MobiDBLite consensus disorder prediction 155 173 - -
Eupl12g00574 413 CDD DUF296 185 299 IPR005175 -
Eupl12g00574 413 SUPERFAMILY AF0104/ALDC/Ptd012-like 182 300 - -
Eupl12g00574 413 MobiDBLite consensus disorder prediction 393 413 - -
Eupl12g00574 413 Pfam Plants and Prokaryotes Conserved (PCC) domain 186 300 IPR005175 -
Eupl12g00574 413 MobiDBLite consensus disorder prediction 1 173 - -
Eupl12g00574 413 ProSiteProfiles PPC domain profile profile. 180 323 IPR005175 -
Eupl12g00574 413 MobiDBLite consensus disorder prediction 130 147 - -
Eupl12g00574 413 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 51 336 IPR039605 GO:0003680
Eupl12g00574 413 MobiDBLite consensus disorder prediction 55 93 - -
Eupl12g00574 413 Gene3D - 186 318 - -
Eupl12g00574 413 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00574 Eupl-Chr12 19557847 19592543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00574 91 410 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 44.737 4.65e-73 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00574 - - nnu:104600822 476.092