Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00572 ATGGAATCAAAAGCATACATGGAGAGAACCAGTTCGAACACCATGAAAGATAGTGGTGTTGGTGGTAGAAGCTTTGGAGATCATAACAGCAAGAAGATTAAAGACTCATGGAACTTCAACAACCACTACTACAGAGGAGATTCGGTAGCTGAGGTTTCATGGCCTCCAAGATCTTATACATGTAGCTTCTGTAAAAGGGAATTTCGATCTGCTCAAGCTCTTGGGGGTCACATGAACGTTCACAGGAGAGATAGAGCCAGGTTGAGACAGTCAACTTTTTGTGACCCTAATTTCTCATCATCCTCTTCTTCAACTAAGATCCCACAATTCAGTACTTACACAGTTCCTTCCTTGGTTACTCCATCTGTTACTTGTCTATCTTCATCATCTTCAGCTTCTTCAAGCTCGAAAGGCGGAGATATAACAAAGACCATGAAAGCCGCCATCTTTGGAGTTGGAGAACTGAAGGGTTTTATGGAAGAAGATGACTGCAAGATTTTGAAGAAAATAGAGATCATTACATCGGATTTGGATGTCAGTCTGTGTTCTAAGGAAGATTTGGATTTGGAGCTCAGGCTTGGGTCTTCTTAG 591 0.4179 MESKAYMERTSSNTMKDSGVGGRSFGDHNSKKIKDSWNFNNHYYRGDSVAEVSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRQSTFCDPNFSSSSSSTKIPQFSTYTVPSLVTPSVTCLSSSSSASSSSKGGDITKTMKAAIFGVGELKGFMEEDDCKILKKIEIITSDLDVSLCSKEDLDLELRLGSS* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00572 196 SMART c2h2final6 59 81 IPR013087 -
Eupl12g00572 196 Pfam C2H2-type zinc finger 59 83 - -
Eupl12g00572 196 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Eupl12g00572 196 SUPERFAMILY beta-beta-alpha zinc fingers 56 86 IPR036236 -
Eupl12g00572 196 Gene3D Classic Zinc Finger 57 106 - -
Eupl12g00572 196 MobiDBLite consensus disorder prediction 1 27 - -
Eupl12g00572 196 PANTHER OS07G0101800 PROTEIN 31 195 - -
Eupl12g00572 196 MobiDBLite consensus disorder prediction 1 19 - -
Eupl12g00572 196 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00572 Eupl-Chr12 19549868 19550764 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00572 7 194 C2H2 Transcription Factor Family AT3G23130 40.376 3.87e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl12g00572 zf-C2H2_6 3.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00572 - - nnu:104600998 169.859