Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00571 ATGGAATCATCCCAGCACAAAGACTCGAAGAAATCGAACGAAGAAAGTGATCATCAGCAAGAGCAAGTCAACGATGTCGATGGTATCGGCCGCTCCTATGAATGTGTGTTTTGCAAGCGAGGCTTCACCACTGCACAAGCCTTGGGTGGACACATGAATATCCATAGGAGAGATAGAGCCAAGATTAGGCAGCCTTCGGCAATTCCTCCGGTTTCGAACCAATCCATCGAAGAATATGCGACACCTGCATATTTTCAGACAATTTCAAACCACCCACCATATTATTTTCCGGCGCACCAGACACCGATGGGTTATCAGATGTATGTACCACCATCCACATCTAGCACTAGACACCCACATCCATACTATGCCGATGATTTGCACATTCAAAAGTCGAGGTCTTTGAATTGGTTCAAGGAGGATCGGTGCATAAATTTAAGCTTGCAAATCGGTCCGACGCGTAAAGATGAGAAAGAAGAACAGCAGAGGCAAGATAAGGAAGAAGATGAACTGGATTTAGAGCTTCGACTGGGTCACGATCCCTAG 546 0.4597 MESSQHKDSKKSNEESDHQQEQVNDVDGIGRSYECVFCKRGFTTAQALGGHMNIHRRDRAKIRQPSAIPPVSNQSIEEYATPAYFQTISNHPPYYFPAHQTPMGYQMYVPPSTSSTRHPHPYYADDLHIQKSRSLNWFKEDRCINLSLQIGPTRKDEKEEQQRQDKEEDELDLELRLGHDP* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00571 181 PANTHER OS07G0101800 PROTEIN 1 180 - -
Eupl12g00571 181 SUPERFAMILY beta-beta-alpha zinc fingers 31 59 IPR036236 -
Eupl12g00571 181 MobiDBLite consensus disorder prediction 150 181 - -
Eupl12g00571 181 Gene3D Classic Zinc Finger 5 81 - -
Eupl12g00571 181 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Eupl12g00571 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Eupl12g00571 181 MobiDBLite consensus disorder prediction 1 25 - -
Eupl12g00571 181 Pfam C2H2-type zinc finger 33 57 - -
Eupl12g00571 181 MobiDBLite consensus disorder prediction 152 181 - -
Eupl12g00571 181 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00571 Eupl-Chr12 19540786 19541708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00571 31 65 C2H2 Transcription Factor Family AT3G09290 80.000 8.87e-16 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl12g00571 zf-C2H2_6 2.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00571 - - tcc:18613190 154.066