Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00562 ATGACAGGGTTTGGATCTCCATGTGGAGCCTGCAAGTTCTTGAGGAGGAAATGTGTGAGGGGTTGTGTTTTTGCTCCCTATTTCTGCCATGAACAAGGAGCGACACATTTCGCGGCAATTCATAAGGTTTTCGGTGCAAGCAATGTTTCAAAGCTCCTCGCACATCTCCCGGTGACAGACCGTAGCGAAGCCGCAGTCACAATATCATATGAAGCTCAAGCTAGGCTTCAAGATCCCATATACGGCTGCGTCTCTCATATTTTCGCACTCCAACAACAGGTTGTCAATTTACAAGCACAACTAGCCTCTCTCAAGGCACAAGCAGCCCAAAGCCTAGTTAATGACTCTAGTACTACTTCATGCCCTCAAGAAGACAAGTTCTATGGAAAATTTTCCAATTACCCACAAGATATCCAAGGTTTATTTCATTTAGATGAGTCAAGGATGGCGCAGCAATTCCATCCAAATCCCTCCATTAATAATGCCGAAAACATGTTATACGACTATGAAAATGGGTTCATGGATCCGAGCGGCGCCATGGGTGATTATCACCATTCATCCATGACTGAAGAAACTGTTCCATTTACTAGTTTTGAAGACCCTTCTCATGTCATGGCTTCTCTTGACATGCAAAGGAACACCAGGAAATGGGCATTCCAAGATACTGATGAGGACCTTCAGTCAGTGGCCTTTGCCTATCTTCAGCATTCATGA 714 0.4468 MTGFGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVTDRSEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKAQAAQSLVNDSSTTSCPQEDKFYGKFSNYPQDIQGLFHLDESRMAQQFHPNPSINNAENMLYDYENGFMDPSGAMGDYHHSSMTEETVPFTSFEDPSHVMASLDMQRNTRKWAFQDTDEDLQSVAFAYLQHS* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00562 237 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 165 - -
Eupl12g00562 237 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Eupl12g00562 237 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Eupl12g00562 237 Coils Coil 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00562 Eupl-Chr12 19369547 19370382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00562 7 234 AS2 family AT3G58190 52.155 1.16e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Eupl12g00562 LOB 1.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00562 K13945 - nnu:104600833 357.451