Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00553 ATGGATTCGTTTCAGGCAGACAGCAATTGGAATCTTCTCGATTATTCTAGTATCATCGAGGACGCAGCGTCAACCGATTTCTATTGGAGTAATCAGAGTGCTTGCATGGAACTTGTTGCTTCACCTGCTGGTGTTGTTTCACAAGAAAAAGGATGCACAGGGAAAAGGGGACGCAATGAGTCATGCAGCGGGCCAGGATCTAAAGCTTGCCGTGAGAAAATGCGGAGGGACAAGATGAATGACAGGTTTGCGGACTTGAGCTCTATTTTGGAGCCTGGGAGACCTGCCAGAACTGATAAATCTGCAATACTCAGCGACGCCATTCGTGTTTTGAACCAACTAAGAACTGAAGCTCAGGAACTTAAAGAGACAAATGAAAAACTTCAAGAAGACATAAAAAATTTAAAGGCAGAGAAGAATGAGCTTCGTGAAGAGAAACTCTTACTTAAGGCAGATAAAGAAAAGGTGGAGCAGCAGGTGAAAGCCATGACCATTCAACCTGCTGGATTTGTGCCGCCACACCCAGCAACATATCAAGCTGGAGTAAACAAGATGATGGCCTTCCCCAGCTATGGTGGGTTTCCGATGTGGCAATGGATACCGCCAACTGCCCTTGATACATCCCAAGATCATGTACTCAGGCCTCCCGTGGCTTAG 657 0.4627 MDSFQADSNWNLLDYSSIIEDAASTDFYWSNQSACMELVASPAGVVSQEKGCTGKRGRNESCSGPGSKACREKMRRDKMNDRFADLSSILEPGRPARTDKSAILSDAIRVLNQLRTEAQELKETNEKLQEDIKNLKAEKNELREEKLLLKADKEKVEQQVKAMTIQPAGFVPPHPATYQAGVNKMMAFPSYGGFPMWQWIPPTALDTSQDHVLRPPVA* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00553 218 Coils Coil 104 159 - -
Eupl12g00553 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 130 IPR036638 GO:0046983
Eupl12g00553 218 PANTHER BHLH TRANSCRIPTION FACTOR 5 218 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Eupl12g00553 218 SMART finulus 69 120 IPR011598 GO:0046983
Eupl12g00553 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 114 IPR011598 GO:0046983
Eupl12g00553 218 CDD bHLH_AtILR3_like 68 143 - -
Eupl12g00553 218 FunFam Transcription factor bHLH104 66 147 - -
Eupl12g00553 218 Gene3D - 67 147 IPR036638 GO:0046983
Eupl12g00553 218 MobiDBLite consensus disorder prediction 50 69 - -
Eupl12g00553 218 Pfam Helix-loop-helix DNA-binding domain 67 114 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00553 Eupl-Chr12 19078208 19086492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00553 40 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 59.459 4.29e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl12g00553 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00553 - - nnu:104600852 330.487