Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g00550 ATGGATTCAATACAGAGGAACATGTCTCACCATGGATCCCAATCTCTTCCTCCCATCAAAAACCAACAACAGACGATATACCGAATCCCACCTCCCCCTCCAGACAACAGTTTCCCCATCTTGTTATTTGCCATACTAGGAATCATTGCCACAGTTCTCTTGTTGGTGAGCTACTATATCTTTGTAATCAAATGCTGCTTGAATTGGCACCTTAACGATTTCCTAAGACGCTTTTCTGCCTCACAACCTGGAGGACATGAGGATCTCTTAATGGCCCATGATGCAGCGACCCAGAATCGCGGTCTCGATGACTCTGTGATCCGGGCAATCCCGATTTTTCAATTCAAGAGAGGAGGAGAAAGGGAAGGTGAAGAGAGAAGCTTCTATGAGTGTGCAGTTTGCTTGAATGAGTTTCGAGAAGAAGAGAAACTAAGAGTTCTGCCCAGCTGCACCCATGCCTTCCATATTGATTGTATTGATATATGGCTCCAAAACAATTCCAATTGCCCCCTTTGCAGATCAAGCATCTCAAACACAACCCAATTTCCATCTAACCAAATCATTGCCCCCACCTCTTCTCCTCAAGATCAAAGTCCATTTACAGATACTCTCATGGGTGGTGATGAGGATTTCGTGGTAATCGAATTGTGGGGTAGTGACGGTGCAGATCAATCTGCCCAAAGACATCAAGAAACAGAAAAATCAGGAGAGCTCTCAGTGCAATCGATAAATCCAAGAAATTTAGAGCAGAGACTAGTGCACAAGAAAGCAAGGAAGTTCCACCATGTTTCAAGCATGGGAGATGAGTGCATTGATATTAGAGGGAAAGATGATCAATTCTCAATACAGTCCATCAGGAGATCTTTCTCTATGGACTCTTCGACCGATCCACAGCTCTACCTATCTATTCAAGAGATCATACAACAGAACAGGCATCTCAATGAGGTTAGCACCAATGAAGGGAGTAGCAGCAGAGTCCGCCGATCGTTCTTTTCGTTCGGCCATGGACGAGGATCCAGAAATGCGGTTCTTCCAATCCAATTCGAGCCGTGA 1053 0.4482 MDSIQRNMSHHGSQSLPPIKNQQQTIYRIPPPPPDNSFPILLFAILGIIATVLLLVSYYIFVIKCCLNWHLNDFLRRFSASQPGGHEDLLMAHDAATQNRGLDDSVIRAIPIFQFKRGGEREGEERSFYECAVCLNEFREEEKLRVLPSCTHAFHIDCIDIWLQNNSNCPLCRSSISNTTQFPSNQIIAPTSSPQDQSPFTDTLMGGDEDFVVIELWGSDGADQSAQRHQETEKSGELSVQSINPRNLEQRLVHKKARKFHHVSSMGDECIDIRGKDDQFSIQSIRRSFSMDSSTDPQLYLSIQEIIQQNRHLNEVSTNEGSSSRVRRSFFSFGHGRGSRNAVLPIQFEP* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g00550 350 CDD RING-H2_EL5-like 130 173 - -
Eupl12g00550 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 179 IPR013083 -
Eupl12g00550 350 MobiDBLite consensus disorder prediction 222 243 - -
Eupl12g00550 350 SMART ring_2 131 172 IPR001841 -
Eupl12g00550 350 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Eupl12g00550 350 FunFam E3 ubiquitin-protein ligase ATL6 91 179 - -
Eupl12g00550 350 PANTHER RING-H2 FINGER PROTEIN ATL16 17 346 IPR044600 GO:0016567|GO:0016740
Eupl12g00550 350 SUPERFAMILY RING/U-box 130 183 - -
Eupl12g00550 350 Pfam Ring finger domain 130 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g00550 Eupl-Chr12 19048063 19049788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g00550 37 350 C3H Transcription Factor Family AT1G04360 49.422 8.24e-97 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g00550 - - nnu:104610035 461.84